View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_high_3 (Length: 620)
Name: NF3651_high_3
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 5493638 - 5494149
Alignment:
| Q |
1 |
ccggcggaatgtttccgttcggaggtttactcaacggcggcattggctgtaactctggactcggccgataccgatcggatcgcttaacggaattcagttt |
100 |
Q |
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| T |
5493638 |
ccggcggaatgtttccgttcggaggtttactcaacggcggcattggctgtaactccggactcggacgataccgatcggatcgcttaacggaattcagttt |
5493737 |
T |
|
| Q |
101 |
atgatacggtgaacggttaggcttctccgtttgattctgatcgttgaccgtcgttgaccttctcgaaggttccacagttccaatgtagagaaaattcgaa |
200 |
Q |
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| T |
5493738 |
atgatacggtgaacggttaggcttctccgtttgattctgatcgttgaccgtcgttgaccttctcgaaggttccacagttccaatgtagagaaaattcgaa |
5493837 |
T |
|
| Q |
201 |
gctactaccggagcagatgaattcgatgaatcttgaagagaattgttcctctgtgtggtattactcactagcttctgtgtatccgcggcgttttttgctc |
300 |
Q |
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| T |
5493838 |
gctactaccggagcagatgaattcgatgaatcttgaagagaattgttcctctgtgtggtagtactcactagcttctgtgtatccgcggcgttttttgctc |
5493937 |
T |
|
| Q |
301 |
tgtgtttgtataaaaagaaagctaacgccgacaacattcctaacgttacgattccaacggagattgctattgctactttctttgttccttttgcaggttg |
400 |
Q |
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| T |
5493938 |
tgtgtttgtataaaaagaaagctaacgccgacaacattcctaacgttacgattccaacggagattgctattgctactttctttgttccttttgcaggttg |
5494037 |
T |
|
| Q |
401 |
tgttgccgttggattcgctgttgtggcgttagaagttaacggtgctgcttgattctgattcgacggtggtgcgtctggatattcatggaagaatggaatg |
500 |
Q |
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| T |
5494038 |
tgttgccgttggattcgctgttgtggcgttagaagttaacggtgctgcttgattctgattcgacggtggtgcgtctggatattcatggaagaatggaatg |
5494137 |
T |
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| Q |
501 |
ttgtcggaggaa |
512 |
Q |
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|||||||||||| |
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| T |
5494138 |
ttgtcggaggaa |
5494149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 559 - 610
Target Start/End: Original strand, 5494196 - 5494247
Alignment:
| Q |
559 |
ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatg |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5494196 |
ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatg |
5494247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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