View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_high_30 (Length: 244)
Name: NF3651_high_30
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27563036 - 27563260
Alignment:
| Q |
1 |
aagaaagaaagtataaaatcaaatgaaaaatatggatatttggaagctaagacaaacctcctgccattgatggtgtgttcagaaggtgcgtgccaatgac |
100 |
Q |
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| T |
27563036 |
aagaatgaaagtataaaatcaaatgaaaaatatggatatttggaagc-aagacaaacctcctgccattgatggtgtgttcagaaggtgcgtgccaatgac |
27563134 |
T |
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| Q |
101 |
attgatgcagaaaaaactctgtgccattgatatttattgatccagcatcttccttccatttcacctgcatcatttattataaagagattctaaagtttag |
200 |
Q |
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| T |
27563135 |
attgatgcagaaaaaactctgtgccattgatatttattgatccagcatcttccttccatttcacctgcatcatttattataaagagattctaaagtttag |
27563234 |
T |
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| Q |
201 |
tcaaattttaagataccaacttacta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27563235 |
tcaaattttaagataccaacttacta |
27563260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 27541597 - 27541687
Alignment:
| Q |
59 |
tcctgccattgatggtgtgttcagaaggtgcgtgccaatgacattgatgcagaaaaaactctgtgccattgatatttattgatccagcatc |
149 |
Q |
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| T |
27541597 |
tcctgccattgatggaatgttcagaaggagagtgccaatgacattgatgcaaaaagaatttggttccattgatgcttattgagccagcatc |
27541687 |
T |
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