View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3651_high_34 (Length: 217)
Name: NF3651_high_34
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 2638306 - 2638121
Alignment:
| Q |
16 |
caaaggagggaaattattaaatatagtgatagtgatataggtagttgattgatgaaattattttaagggcactttggtcctccttgttgggtcttccagt |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2638306 |
caaaggagggaaattattaaatataatgatagtgatataggtagttgattgatgaaattattttaagggcacttgggtcctccttgttgggtcttccagt |
2638207 |
T |
|
| Q |
116 |
tgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcacttcctacaacacttctgacagaaaaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2638206 |
tgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcacttcctacaacacttctgacagaaaaac |
2638121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 35649511 - 35649611
Alignment:
| Q |
76 |
ttttaagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcact |
175 |
Q |
| |
|
||||||||||| || |||||||| || ||||||||||||||||||||||||||| || ||||| ||||||||||| || || |||||||| |||| |
|
|
| T |
35649511 |
ttttaagggcatttgggtcctccccttttggtcttccagttgttgtagcaagggcaaacctgcttgttgccataatagccaggaggcacacacaaacact |
35649610 |
T |
|
| Q |
176 |
t |
176 |
Q |
| |
|
| |
|
|
| T |
35649611 |
t |
35649611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 3730054 - 3729938
Alignment:
| Q |
78 |
ttaagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcacttc |
177 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||||| || |
|
|
| T |
3730054 |
ttaagggcattttggtcctccttgttgagtcttccaattgttgtagcaagggcatacagctttgttcccataataccccgggggcacacacaagcatttg |
3729955 |
T |
|
| Q |
178 |
ctacaacacttctgaca |
194 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
3729954 |
ttacaacacttttgaca |
3729938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 13878873 - 13878948
Alignment:
| Q |
80 |
aagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcc |
155 |
Q |
| |
|
||||||| ||||||||||| | | ||||||||| |||||||| || || ||||||| |||||||||||||||||| |
|
|
| T |
13878873 |
aagggcattttggtcctccacgcttggtcttccaattgttgtaacagggacacacagatttgttaccataatagcc |
13878948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University