View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_high_4 (Length: 556)
Name: NF3651_high_4
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 13795528 - 13795123
Alignment:
| Q |
18 |
cctctatatcatctttcgaagtggtagtgtgggaccgacttatttaccgtccattctaatcttcaattggcataatatggattgcattctaccaattcag |
117 |
Q |
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| T |
13795528 |
cctctagatcatcttttgaagtggtagtgtgagaccgatttatttaccgtccattctaatcttcaattggcataat--ggattgtattctaccaattcaa |
13795431 |
T |
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| Q |
118 |
cttgcaatgtctttcctgtgatattttttcagaaggttaatttgtttgtttgcatcaaaacgtcatttcgtattattaacccatagtggaaaatatagga |
217 |
Q |
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| T |
13795430 |
cttgcaatgtctttcctgtgatattttttccaaaggttaatttgtttgtttgcatcaaaacgtcatttcgt---attaacccataatggaaaatatagga |
13795334 |
T |
|
| Q |
218 |
tattcctaaaccaatttctacaaacataacaacagggttgaaaaacagttgacacttcatattccctttttcttccataagagaagggatgatgaaaaca |
317 |
Q |
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| T |
13795333 |
tattcctaaaccaa-ttctgcaaacataacaacagggttgaaaaagagttgacacttcatattccctttttcttccataagagaaggcatgataaaaacc |
13795235 |
T |
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| Q |
318 |
aaatgtaaaagg-aagc---aataaattaagttcttgaaacctgcattgtaactgtaagtcacaacctttactttgaaaccaaatcatatagcctataaa |
413 |
Q |
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| T |
13795234 |
aaatgtaaaaggaaagcaaaaacaacttaagttcttgaaaccagcattgtaaccgtaagtcacaacctttactttaaaaccaaatcatatagcctataaa |
13795135 |
T |
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| Q |
414 |
acctgaagatgg |
425 |
Q |
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| T |
13795134 |
acccgaaaatgg |
13795123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 105 - 336
Target Start/End: Complemental strand, 17587161 - 17586934
Alignment:
| Q |
105 |
tctaccaattcagcttgcaatgtctttcctgtgatattttttcagaaggttaatttgtttgtttgcatcaaaacgtcatttcgtattattaacccatagt |
204 |
Q |
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| T |
17587161 |
tctaccaattcaaattgcactgtctttcctgtgatattttc-cataaggttaacttgtttgtttgcattaaaacgtcatttcgt---attaacccgtatt |
17587066 |
T |
|
| Q |
205 |
ggaaaatataggatattcctaaaccaatttctacaaacataacaacagggttg-----aaaaacagttgacacttcatattccctttttcttccataaga |
299 |
Q |
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| T |
17587065 |
ggaaataataggctattcct-aaccaatttctgaaaac---acaacatggttgaaaaaaaaaaaaattaacacttcatattcccttatt-tttcataagt |
17586971 |
T |
|
| Q |
300 |
gaagggatgatgaaaacaaaatgtaaaaggaagcaat |
336 |
Q |
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| T |
17586970 |
aaaggcatgatgacatcaaaatgtaaaaggaagcaat |
17586934 |
T |
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