View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_high_6 (Length: 496)
Name: NF3651_high_6
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Complemental strand, 3289759 - 3289275
Alignment:
| Q |
10 |
aagaatatacctaactacatctcacaacactctaagaaaagagcgcaagagaaaagnnnnnnngtcagatactagtctaaagtgttatataaatagtctt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3289759 |
aagaaaatacctaactacatctcacaacactctaagaaaagagcgcaagagaaaagaaaaaa-gtcagatactagtctaaagtgttatataaatagtctt |
3289661 |
T |
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| Q |
110 |
ggtctccttcttccttaaaaattataagaaatgtgggacttctccaacatgtatgttttcaagcaacaacaaacaatttgaactacctcaactacgttaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3289660 |
ggtctccttcttccttaaaaattataagaaatgtgggacttctccaacatgtatgttttcaagcaacaacaaacaatttgaactacctcaactacgttaa |
3289561 |
T |
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| Q |
210 |
tcactgaatttgttatcttattttgtgccaaaataataataataa-nnnnnnnnaaaagaattaaaatgaaaagacttaccatcccccaagaaagaccct |
308 |
Q |
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| T |
3289560 |
tcactcaatttgttatcttattttgtgtcaaaataataataataattttttttttaaagaattaaaattaaaagacttaccatcccccaagaaagaccct |
3289461 |
T |
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| Q |
309 |
tccaagcttcatacccagatttctccccatattgccacaccaaagccatagcaataatccnnnnnnnnnnnncaatnnnnnnnnncacaaaaatgaagat |
408 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
3289460 |
tccaagcttcatacccagatttctctccatattgccacaccaaagccatagcaataatccttttttatttttcaat--aaaaaaacacaaaaatgaagat |
3289363 |
T |
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| Q |
409 |
taaaatactagatagaagggataagataaaagtgaagttaataccattcaacgacgctggagacatgaacagcccaagtgggtaaaga |
496 |
Q |
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| T |
3289362 |
taaaatagtagatagaagggataagataaaagtgaagttaataccattcaacgacgctggagacatgaacagcccaagtgggtaaaga |
3289275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 1605260 - 1605302
Alignment:
| Q |
10 |
aagaatatacctaactacatctcacaacactctaagaaaagag |
52 |
Q |
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| T |
1605260 |
aagaaaatacctaactacatctcataacactctaagacaagag |
1605302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 18779993 - 18780034
Alignment:
| Q |
10 |
aagaatatacctaactacatctcacaacactctaagaaaaga |
51 |
Q |
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| T |
18779993 |
aagaaaatatctaactacatctcacaacactctaagacaaga |
18780034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 25078340 - 25078304
Alignment:
| Q |
16 |
atacctaactacatctcacaacactctaagaaaagag |
52 |
Q |
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| T |
25078340 |
atacctaattacatctcacaacactctaagacaagag |
25078304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 14437226 - 14437262
Alignment:
| Q |
16 |
atacctaactacatctcacaacactctaagaaaagag |
52 |
Q |
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| T |
14437226 |
atacctaactacatctcacaacactttaagacaagag |
14437262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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