View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_low_12 (Length: 391)
Name: NF3651_low_12
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 13676980 - 13676777
Alignment:
| Q |
3 |
cttcatcaagtttagttttttgaagtatcgggcttcattatttgaagcgtttatagttaaagtttaagagaatttcttatcccatcccaatgtttgtagc |
102 |
Q |
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| T |
13676980 |
cttcatcaagtctagttttttgaagtatcgggcttcattatttgaagcgtttatagttaaagtttaagagaatttcttatcccatcccaatgtttctagc |
13676881 |
T |
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| Q |
103 |
gtaccatctaaaattttgaaaatgtcttctaaaatctaatgttttgcactttaaaaacgagttaaagaccccatttggattttagaatccgaagatcgga |
202 |
Q |
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| T |
13676880 |
gtaccatctaaaattatgaaaatgtcttctaaaatctgatgttttgcactttgaaaacgagctaaagaccccacttggattttagaatccaaagattgga |
13676781 |
T |
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| Q |
203 |
ggat |
206 |
Q |
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|||| |
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| T |
13676780 |
ggat |
13676777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 244 - 379
Target Start/End: Complemental strand, 13676776 - 13676641
Alignment:
| Q |
244 |
gggtcagataagaaaatctcaaagtttataggcctaaaagaatacaattttcaaagttcgtccattttaaaatcaacgtgaaattataacaagatctgat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
13676776 |
gggtcagataagaaaatctcaaagtttataggcctaaaagaatacaattttcaaagttcgtcccttttaaaatcaacgcgaaattataacaagatctgat |
13676677 |
T |
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| Q |
344 |
attttgattaagagattatgtatattattggttctg |
379 |
Q |
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| T |
13676676 |
attttgattaagagattatgtatattattggttctg |
13676641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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