View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_low_16 (Length: 320)
Name: NF3651_low_16
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 43601909 - 43602042
Alignment:
| Q |
18 |
aaatacatatggaaattgggatgtcaaatttcaggccatttggtgagctgcttttatgattgaaacttgaaggagtaccattaatggacttacaattaat |
117 |
Q |
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| T |
43601909 |
aaatacatatggaaattgggatgtcaaatttcaggccatttggtgagctgcttttatgattgaaacttgaaggagtaccattaatggacttacaattaat |
43602008 |
T |
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| Q |
118 |
gccaccagataagtcaggaaacggttaagatcaa |
151 |
Q |
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| T |
43602009 |
gccaccagataagtcaggaaacggttaagatcaa |
43602042 |
T |
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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 43602041 - 43602160
Alignment:
| Q |
185 |
aaaataatcaatcagtcctcatcagttaattcaaaagaaatttatttatatttccctcaaatgattccattattcatttgatattatatttttctctaaa |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602041 |
aaaataatcaatcagtcctcatcagttaattcaaaagaaattt----atatttccctcaaatgattccattattcatttgatattatatttttctctaaa |
43602136 |
T |
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| Q |
285 |
cataacctttcaaatatatggtga |
308 |
Q |
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| T |
43602137 |
cataacctttcaaatatatggtga |
43602160 |
T |
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