View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3651_low_17 (Length: 318)

Name: NF3651_low_17
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3651_low_17
NF3651_low_17
[»] chr5 (6 HSPs)
chr5 (11-318)||(38604952-38605259)
chr5 (11-216)||(40180450-40180652)
chr5 (49-199)||(38605684-38605831)
chr5 (48-179)||(40181199-40181330)
chr5 (228-316)||(38605860-38605948)
chr5 (228-308)||(40180712-40180792)
[»] chr6 (3 HSPs)
chr6 (13-181)||(410926-411095)
chr6 (136-191)||(9161361-9161416)
chr6 (271-316)||(410782-410827)
[»] chr8 (7 HSPs)
chr8 (13-316)||(44460157-44460457)
chr8 (13-316)||(44467690-44467990)
chr8 (15-257)||(34502221-34502460)
chr8 (46-199)||(44459572-44459722)
chr8 (46-199)||(44467105-44467255)
chr8 (272-316)||(44459446-44459490)
chr8 (272-316)||(44466979-44467023)
[»] chr1 (1 HSPs)
chr1 (13-316)||(46359027-46359327)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 38604952 - 38605259
Alignment:
Q  11 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38604952 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 38605051  T
Q  111 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605052 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 38605151  T
Q  211 tatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38605152 tatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcggaatggccaatatgtttaagcaagtcccacagaaaaagtatgt 38605251  T
Q  311 cattctgc 318  Q
    ||||||||    
T  38605252 cattctgc 38605259  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 40180450 - 40180652
Alignment:
Q  11 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 110  Q
    |||||||||||||||| || ||||| |||||||| ||||||||||| || ||||||||||||||||| | ||||| |||| ||  | | | |  | |||     
T  40180450 catcatcaggaaggagagtatctggttgaagcaccatcttttgacatatggaagcggcttgctggagtacatcagtactgtaatctat-gcc--acaaat 40180546  T
Q  111 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 210  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |  ||||||| ||| |||| |||||| | |    
T  40180547 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctttgtcccaaata 40180646  T
Q  211 tatcca 216  Q
    ||||||    
T  40180647 tatcca 40180652  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 38605684 - 38605831
Alignment:
Q  49 ttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggca 148  Q
    |||||||||||||||| |||||| ||||  ||||||||||| ||  |||| |||   ||||||||||  |||||||||  |||||  |||||||| ||||    
T  38605684 ttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtc---aaaagagcttgaagtgtaaagtaatatgtgtcttgatttggca 38605780  T
Q  149 cacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 199  Q
    |||| ||||||||||||||  ||||||||||||  ||||||| ||| ||||    
T  38605781 cacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgcctt 38605831  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 40181199 - 40181330
Alignment:
Q  48 cttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggc 147  Q
    ||||||| |||||||  | ||||| |||| |||||||||||| || |||||  || | |||||||||| ||||||| ||  ||||| ||||||||| |||    
T  40181199 cttttgatagatagactctgcttggtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaatatgtatcttgatttggc 40181298  T
Q  148 acacactgaaagacctcaaatttatgaaaaac 179  Q
    ||||| ||||| || ||||| |||||||||||    
T  40181299 acacattgaaatacgtcaaaattatgaaaaac 40181330  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 38605860 - 38605948
Alignment:
Q  228 gagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 316  Q
    ||| |||||||||||  | | ||||||||| || || | | ||||||||||||  |||||||| |||||||||||||||||||||||||    
T  38605860 gaggtgattgagaatgggtgggttaagaaggccggtttgataatggccaatattcttaagcaaatcccacagaaaaagtatgtcattct 38605948  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 40180712 - 40180792
Alignment:
Q  228 gagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtat 308  Q
    |||||||||||||||| | |||||||||| ||| |||| | | ||||||||||| || ||||||| ||||||| |||||||    
T  40180712 gagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtat 40180792  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 411095 - 410926
Alignment:
Q  13 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatca-gcactgcaacttgttgtcttaaaaaga 111  Q
    ||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| | | |||||||||||||||  ||||||||    
T  411095 tcatcgggaaggagggtttctggatgaagcagcatcttttgacagatagaagccgcttgctggagcatataaagtactgcaacttgttgttctaaaaaga 410996  T
Q  112 gcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaactt 181  Q
    ||||||| ||||||||| |||| ||||||||| || ||||| ||||| ||||||||||||||||||||||    
T  410995 gcttccaatgtaaagatgtatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaactt 410926  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 9161416 - 9161361
Alignment:
Q  136 tcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagt 191  Q
    |||||||| || ||||| |||||||||||||||| |||||||||||  ||||||||    
T  9161416 tcttgattcggaacacattgaaagacctcaaattaatgaaaaacttcaagtgcagt 9161361  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 410827 - 410782
Alignment:
Q  271 tggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 316  Q
    ||||||||||| ||||||||||| |||| ||||| |||||||||||    
T  410827 tggccaatatgcttaagcaagtctcacataaaaattatgtcattct 410782  T

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Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 44460457 - 44460157
Alignment:
Q  13 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 112  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  44460457 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 44460361  T
Q  113 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 212  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  44460360 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 44460261  T
Q  213 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 312  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  44460260 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 44460161  T
Q  313 ttct 316  Q
    ||||    
T  44460160 ttct 44460157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 44467990 - 44467690
Alignment:
Q  13 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 112  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  44467990 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 44467894  T
Q  113 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 212  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  44467893 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 44467794  T
Q  213 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 312  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  44467793 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 44467694  T
Q  313 ttct 316  Q
    ||||    
T  44467693 ttct 44467690  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 34502221 - 34502460
Alignment:
Q  15 atcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagct 114  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||  ||||||||   | || |||||  ||   |||||||||    
T  34502221 atcaggaaggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatc---aaaagagct 34502317  T
Q  115 tccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacatatc 214  Q
    | |||||||||| | |||| |||| |||| |||||||| |||||  ||||||||||||||||||||| | ||||| |||| ||||||||| ||| | ||     
T  34502318 ttcagtgtaaaggtgtatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaacttcgggtgcaatctttccttggtccaacataaatg 34502417  T
Q  215 caaatgaatctaggagttgattgagaatctgggtgttaagaag 257  Q
    |||  |||| ||||||||||| ||||||| | |||||||||||    
T  34502418 caagggaatgtaggagttgatagagaatccgtgtgttaagaag 34502460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 44459722 - 44459572
Alignment:
Q  46 atcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattag 145  Q
    ||||| |||||||||||||| ||||| |||| ||||| || ||| ||  | || |||   |||||||||| ||| ||||||  ||||| ||| ||||| |    
T  44459722 atcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtc---aaaagagcttgcagagtaaagtaatatgtatcgtgatttg 44459626  T
Q  146 gcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 199  Q
    |||||||||||||| |||||||  ||||||||||||  |||||||  |||||||    
T  44459625 gcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttacctt 44459572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 44467255 - 44467105
Alignment:
Q  46 atcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattag 145  Q
    ||||| |||||||||||||| ||||| |||| ||||| || ||| ||  | || |||   |||||||||| ||| ||||||  ||||| ||| ||||| |    
T  44467255 atcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtc---aaaagagcttgcagagtaaagtaatatgtatcgtgatttg 44467159  T
Q  146 gcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 199  Q
    |||||||||||||| |||||||  ||||||||||||  |||||||  |||||||    
T  44467158 gcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttacctt 44467105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 44459490 - 44459446
Alignment:
Q  272 ggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 316  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  44459490 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttct 44459446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 44467023 - 44466979
Alignment:
Q  272 ggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 316  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  44467023 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttct 44466979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 46359327 - 46359027
Alignment:
Q  13 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 112  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  46359327 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 46359231  T
Q  113 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 212  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  46359230 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 46359131  T
Q  213 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 312  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  46359130 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 46359031  T
Q  313 ttct 316  Q
    ||||    
T  46359030 ttct 46359027  T

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