View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_low_18 (Length: 308)
Name: NF3651_low_18
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 27976692 - 27976414
Alignment:
| Q |
9 |
gagatgaagtatcagtatcctcctgcatgttggatccttgacctgattttctaaaaagtccttcatgtggtgtatatttgtattatgtggttgttgtgta |
108 |
Q |
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| T |
27976692 |
gagatgaagtatcagtatcct---gcatgttggatccttgacctgattttctaaaaagtgcttcatgtggtgtatatttgtattctgtggttgttgtgta |
27976596 |
T |
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| Q |
109 |
tggactttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtccattgtcacaagagcattcttcatttctcttaac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27976595 |
tggactttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtcccttgtcacaagagcattcttcatttctcttaac |
27976496 |
T |
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| Q |
209 |
tgcacaaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtgtccgatatgttacgt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27976495 |
tgcacaaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtgtccgatatgttacgt |
27976414 |
T |
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