View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_low_21 (Length: 293)
Name: NF3651_low_21
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 38605236 - 38605504
Alignment:
| Q |
14 |
cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagggattccaaaacaggggtagtgatga |
113 |
Q |
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| T |
38605236 |
cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagagattccaaaacaggggtagtgatga |
38605335 |
T |
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| Q |
114 |
gatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605336 |
gatgtgaattactcctaaaagcccacttgataaagtgaataagaatatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaat |
38605435 |
T |
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| Q |
214 |
aattttgagtagaaaatgtggttgat-------gctgatgcagagtttccaagcatgtgaaactgaaac |
275 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38605436 |
aattttgagtagaaaatgtggttgatgctgatggctgatgcagagtttccaagcatgtgaaactgaaac |
38605504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 40180851 - 40180884
Alignment:
| Q |
83 |
acaagggattccaaaacaggggtagtgatgagat |
116 |
Q |
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| T |
40180851 |
acaagggattccagaacaggggtagtgatgagat |
40180884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 44460121 - 44459952
Alignment:
| Q |
71 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
161 |
Q |
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| T |
44460121 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44460022 |
T |
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| Q |
162 |
gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
231 |
Q |
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| T |
44460021 |
gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg |
44459952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 44467654 - 44467485
Alignment:
| Q |
71 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
161 |
Q |
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| T |
44467654 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44467555 |
T |
|
| Q |
162 |
gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
231 |
Q |
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| T |
44467554 |
gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg |
44467485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 34502528 - 34502698
Alignment:
| Q |
71 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta---------ctcctaaaagcccacttgataaa-gtgaataagatta |
160 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||| ||||||||| || | ||||| |||||||||| ||||| ||| ||||||||| |
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| T |
34502528 |
catattgctgaaacaagggattccagaacaagggtagtaatgagatgtttataagtgttcctcctcctccaagcccacttcataaaagtggataagatta |
34502627 |
T |
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| Q |
161 |
tgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
231 |
Q |
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| T |
34502628 |
tgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttgagtacaaaatg |
34502698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 44459420 - 44459275
Alignment:
| Q |
70 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
169 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44459321 |
T |
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| Q |
170 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataa |
215 |
Q |
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| T |
44459320 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataa |
44459275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 44466953 - 44466808
Alignment:
| Q |
70 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
169 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44466854 |
T |
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| Q |
170 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataa |
215 |
Q |
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|||||||||| |||||| | |||||||||| ||||||||||||| |
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| T |
44466853 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataa |
44466808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 46358991 - 46358821
Alignment:
| Q |
70 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
169 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
46358991 |
gcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
46358892 |
T |
|
| Q |
170 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
240 |
Q |
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|||||||||| |||||| | |||||||||| ||||||||||||| ||| ||| ||| ||| ||||||| |
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|
| T |
46358891 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 410732 - 410692
Alignment:
| Q |
70 |
gcatattgctgaaacaagggattccaaaacaggggtagtga |
110 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||| |
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| T |
410732 |
gcatattgctgaaataagggactccagaacaggggtagtga |
410692 |
T |
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