View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3651_low_40 (Length: 206)

Name: NF3651_low_40

Description: NF3651

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3651_low_40

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 155; E-Value: 2e-82

Query Start/End: Original strand, 35 - 189

Target Start/End: Complemental strand, 36899440 - 36899286

Alignment:

Q	35	atgtaagtaaagtttgacaaataattattatagatttatggtcacgattgtattagagtaaaatttaataattctctagtgattggaagatacataccaa	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36899440	atgtaagtaaagtttgacaaataattattatagatttatggtcacgattgtattagagtaaaatttaataattctctagtgattggaagatacataccaa	36899341	T

Q	135	gtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggt	189	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36899340	gtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggt	36899286	T

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Target: chr8; HSP #2

Raw Score: 32; E-Value: 0.000000004

Query Start/End: Original strand, 122 - 189

Target Start/End: Original strand, 37008905 - 37008972

Alignment:

Q	122	agatacataccaagtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggt	189	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	37008905	agatacataccaagggtatcaccagccctaaagcgttttccattaggccatccaacagtgttaaaggt	37008972	T

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