View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3651_low_8 (Length: 417)
Name: NF3651_low_8
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3651_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 52 - 404
Target Start/End: Original strand, 33202746 - 33203095
Alignment:
| Q |
52 |
aactaaactaattaaccatacactaaataaattttaatttcaattacctttataaatagttcattgtggatgagtattttagaaatgtttaaaactctaa |
151 |
Q |
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| T |
33202746 |
aactaaactaattaactatacactaaataaattttaatttcaatcacctttataagtaattcattgtggatgagtattttagaaatatttaaaactctaa |
33202845 |
T |
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| Q |
152 |
tgatgatcgatatcttctcttgatagtatatattaatgatttaattgatactgattagatattagtcaactcattgttttagccgtaaatgcaaaaaggt |
251 |
Q |
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| T |
33202846 |
tgatgattgatatcttctgttgatagtatatactaatgatttaac-gataccgattagatattaat--actcattgttttaatcgtaaatacaaaaaggt |
33202942 |
T |
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| Q |
252 |
gatgagtttttatttgtgaatagtatccaaccttattaaaaaatatgattcactctagaccacttataaatttgtctatcgaagaactcaccctatatac |
351 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33202943 |
gatgagtttttatttgtgaatggtatccaaccttattaaaaaatttgattcactctagaccacttataaatttgtgtatcgaagaactcaccctatatac |
33203042 |
T |
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| Q |
352 |
actatttaaatttcatcacaatgaataattagcaattaccactagtactaatt |
404 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
33203043 |
actatttaaatttcatcacaatcaataattagcaattaccactactactaatt |
33203095 |
T |
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