View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3652_low_1 (Length: 603)
Name: NF3652_low_1
Description: NF3652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3652_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Original strand, 28438465 - 28439039
Alignment:
| Q |
18 |
tttatgagtctgtcttgtttatttattatgttcaaaatcaacatatgtatgtaatagaagggtcannnnnnnnnnnnnngaacaagtagaagggtcattt |
117 |
Q |
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| T |
28438465 |
tttatgagtctgtcttgtttatttattatgttcaaaatcaacatatgtatgtaatagaagggtcattttttttttttttgaacaagtagaagggtcattt |
28438564 |
T |
|
| Q |
118 |
tatatcatatcattttgttgaaaaattcagcatgtgtaatataattgtcaaacttctcttttgtattgatnnnnnnnnnnnnnnnnn---ttctcttttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28438565 |
tatatcatatcattttgttgaaaaattcagcatgtgtaatataattgtcaaacttctcttttgtattgataaaaaaaaataaaaaaaaaattctcttttg |
28438664 |
T |
|
| Q |
215 |
cattgataaatttaagcttgatgctagttaatataattgtcacaattcttttaattaatatatctaattgtttcatatgtttcaaccctccatta-tttt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
28438665 |
cattgataaatttaagcttgatgctagttaatataattgtcacaattcttttaattaatatatctaattgtttcatatgtttctaccctccattattttt |
28438764 |
T |
|
| Q |
314 |
tatatgctatccattactagtaatgtgtatcaatctaacgtggaaattgagaaagtaatgatttagctatgtagcaccaacatttcatattgatgtcatg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
28438765 |
tatatgctatccattactagtaatgtgtatcaatctaacatggaaattgagaaagtaatgatttagctatgtagcaccgatatttcatattgatgtcatg |
28438864 |
T |
|
| Q |
414 |
tcagtatcagtactgtgtcagtgcctgactcgggcacatgtctcgttacattcaaatatttgtattctcattctttgcttattatatattagatattctt |
513 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28438865 |
------tcagtactatgtcagtgcccgactcgggcacatgtctcgttacattcaaatatttgtattctcatcctttgcttattatatattagatattctt |
28438958 |
T |
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| Q |
514 |
caatggaagaaaaatgtggtgacttgaaaaatgttgcaaactgaattagaatcagttgattaaattcaggtattgatgatg |
594 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438959 |
caatggaagaaaaatgtggtgacttgaaaaatgtaccaaactgaattagaatcagttgattaaattcaggtattgatgatg |
28439039 |
T |
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