View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3652_low_2 (Length: 397)
Name: NF3652_low_2
Description: NF3652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3652_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 35021668 - 35022034
Alignment:
| Q |
17 |
cacctccctcacctgaccgcatcaccaccgccatgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttct |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021668 |
caccaccctcacctgaccgcatcaccaccgccatgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttct |
35021767 |
T |
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| Q |
117 |
ctacaccaacatctccctcttcctcacaatccccaactacctcgtcactcacatcgctactaaccgctccatcgcacgtgcatggatctacactcacgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021768 |
ctacaccaacatctccctcttcctcacaatccccaactacctcgtcactcccatcgccactaaccgctccatcgcacgtgcatggatctacactcacgtg |
35021867 |
T |
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| Q |
217 |
cttcccttctacccacgcgccaaaatcaccaccatctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021868 |
cttcccttctacccacgcgccaaaatcaccaccatctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatct |
35021967 |
T |
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| Q |
317 |
ccaacgttcacatctcccttcgcgacctcggcattcgtaaaatctccgtttcaacttccttctcctt |
383 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35021968 |
ccaacgttcacatctcccttcgcgacctcggtattcgtaaaatctccgtttcaacttccttctcctt |
35022034 |
T |
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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 42811575 - 42811487
Alignment:
| Q |
273 |
cgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatct |
361 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
42811575 |
cgacgtttaccctgaatccatcaacaacctcctccccgccatctccaacgttcacatctcccttcacgacctcggcatccataaaatct |
42811487 |
T |
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