View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3652_low_3 (Length: 290)
Name: NF3652_low_3
Description: NF3652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3652_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 35766080 - 35766352
Alignment:
| Q |
13 |
attttgccatccatattcttttgcacgtttatcaacagaagcccaataccgttcccaggagtttgtttcatcattttcaagttggttcaattcccatcca |
112 |
Q |
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| T |
35766080 |
atttttccatccatattcttttgcacgtttatcaacagaagcccaataacgttcccaggagtttgtttcatcattttcatgttggttcaattcccatcct |
35766179 |
T |
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| Q |
113 |
tgagaagcataatttggctcaggaggctttgttacttgttctttttcttcttcatccccccatccagtaggtatgattccaagatcggcaaaggacttct |
212 |
Q |
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| T |
35766180 |
tgagaagcataatttggttcagaaggttttcttacctcatctttttcctcttcgtccccccatccagtaggtacgattccaagatcggcaaaggacttct |
35766279 |
T |
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| Q |
213 |
tctctaggagagaattatcgataattagagtcacgtcgcgtttttcttccatgttgtcactggcctatgcttc |
285 |
Q |
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| T |
35766280 |
tcactaggagagaattatcgataattagagtcacgtcgcgtttttcttccatgttgtcactggcctctgcttc |
35766352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 35760600 - 35760768
Alignment:
| Q |
13 |
attttgccatccatattcttttgcacgtttatcaacagaagcccaataccgttcccaggagtttgtttcatcattttcaagttggttcaattcccatcca |
112 |
Q |
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| T |
35760600 |
atttcgccaaccatattcttttgaatgttcaacaacaggagcacgatactgttcccaagagtttgtttcattattttcatgttggttcgattcccatccc |
35760699 |
T |
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| Q |
113 |
tgagaagcataatttggctcaggaggctttgttacttgttctttttcttcttcatccccccatccagtaggt |
184 |
Q |
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| T |
35760700 |
tgagcagcataattcggttcagaaggctttgttac---ttctttttcttcttcgtccccccatccagtaggt |
35760768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 35755504 - 35755618
Alignment:
| Q |
63 |
gttcccaggagtttgtttcatcattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttc |
162 |
Q |
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||||||| ||||||||||||| ||||||| |||| || |||||||||| ||| ||||||||||||||||| ||||||| | |||| |||||||||||| |
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| T |
35755504 |
gttcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttctaacttcttctttttcttc |
35755603 |
T |
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| Q |
163 |
ttcatccccccatcc |
177 |
Q |
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| T |
35755604 |
ttcgtccccccatcc |
35755618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 35799092 - 35799201
Alignment:
| Q |
72 |
agtttgtttcatcattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttcttcatcccc |
171 |
Q |
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| T |
35799092 |
agtttgtttcattattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaacttttc---gtcttcttcgtcccc |
35799188 |
T |
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| Q |
172 |
ccatccagtaggt |
184 |
Q |
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| T |
35799189 |
ccatccagtaggt |
35799201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 35785580 - 35785648
Alignment:
| Q |
13 |
attttgccatccatattcttttgcacgtttatcaacagaagcccaataccgttcccaggagtttgtttc |
81 |
Q |
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| T |
35785580 |
atttttccacccatattcttttgcatgttcatcaacaggagcatgatactgttcccaagagtttgtttc |
35785648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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