View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3652_low_5 (Length: 257)

Name: NF3652_low_5
Description: NF3652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3652_low_5
NF3652_low_5
[»] chr2 (34 HSPs)
chr2 (1-247)||(38792761-38793007)
chr2 (38-192)||(39389804-39389958)
chr2 (17-247)||(39415560-39415790)
chr2 (28-224)||(39222138-39222334)
chr2 (38-247)||(39136932-39137141)
chr2 (28-224)||(39221928-39222124)
chr2 (102-247)||(39222577-39222722)
chr2 (1-176)||(39390607-39390782)
chr2 (1-247)||(39415286-39415538)
chr2 (56-232)||(39451279-39451455)
chr2 (1-83)||(38792673-38792755)
chr2 (54-191)||(39390534-39390671)
chr2 (56-167)||(39602836-39602947)
chr2 (144-242)||(39390078-39390176)
chr2 (28-110)||(39391087-39391169)
chr2 (1-110)||(38793151-38793260)
chr2 (1-106)||(39221626-39221731)
chr2 (88-220)||(39192611-39192743)
chr2 (88-220)||(39198291-39198423)
chr2 (3-136)||(39192988-39193121)
chr2 (3-136)||(39198668-39198801)
chr2 (29-77)||(39136598-39136646)
chr2 (59-247)||(39222241-39222429)
chr2 (38-166)||(39389405-39389533)
chr2 (195-247)||(39389709-39389761)
chr2 (54-122)||(39390324-39390392)
chr2 (38-77)||(39458568-39458607)
chr2 (58-136)||(39415475-39415553)
chr2 (169-247)||(39603218-39603296)
chr2 (202-247)||(38793013-38793058)
chr2 (46-139)||(39221887-39221980)
chr2 (46-139)||(39222097-39222190)
chr2 (54-135)||(39603204-39603285)
chr2 (28-72)||(39221870-39221914)
[»] chr5 (3 HSPs)
chr5 (28-136)||(33560229-33560337)
chr5 (87-232)||(33560511-33560656)
chr5 (46-176)||(33560651-33560781)
[»] chr7 (3 HSPs)
chr7 (178-247)||(19807293-19807362)
chr7 (29-77)||(19806959-19807007)
chr7 (86-224)||(19807190-19807328)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 38793007 - 38792761
Alignment:
Q  1 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38793007 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggc 38792908  T
Q  101 tttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctg 200  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38792907 tttcgaattctctctctattgactcaaactccttcattttgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaatttctg 38792808  T
Q  201 tttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  38792807 tttagattcctggtccttcacttgaccttcaaattctctctcttttg 38792761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 39389804 - 39389958
Alignment:
Q  38 actcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcat 137  Q
    ||||||| ||||||||||||||||   |||||||||||||||||||| |||||| |||||||| ||||||| | |||||| |||| ||||||||| ||||    
T  39389804 actcaagctccttcatttggcttttataatgcttctgtttcaatacctgctcctccatttggcattcaaatcccctctcttttgattcaaactccatcat 39389903  T
Q  138 ttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaac 192  Q
    || || |||||||||||||||||||||||| |||||||| ||||| | |||||||    
T  39389904 tttgcctacaagttggttatcttttgactctaactccttcacttggccttcaaac 39389958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 39415560 - 39415790
Alignment:
Q  17 cttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctc 116  Q
    |||||| ||| ||||||||   |||||| |||||||||   |||| |||||||||||||||  || |||| ||||||||||||| ||||||||| |||||    
T  39415560 cttcatgttgcttctcttttgcctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctc 39415659  T
Q  117 tattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctcc 216  Q
    | |||| | |||||||||||||| |  ||| ||||| |  ||||||||||| |||||||| |||||  ||||||||| ||||| |||||||| | |||||    
T  39415660 ttttgatttaaactccttcatttggtctacgagttgctgttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctcc 39415759  T
Q  217 ttcacttgaccttcaaattctctctcctttg 247  Q
    ||||| || ||||||||||||||||| ||||    
T  39415760 ttcacctggccttcaaattctctctcttttg 39415790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 39222334 - 39222138
Alignment:
Q  28 ttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaa 127  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||  |||  || |||||| ||||   |||| ||||||||| |||||| |||| | ||    
T  39222334 ttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttgatttaa 39222235  T
Q  128 actccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttg 224  Q
    ||| | ||| || || |||||||||||||||||||||||  |||||||| ||||| |||||||||| ||||| |||||||||| |||||||||||||    
T  39222234 acttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcacttg 39222138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 39137141 - 39136932
Alignment:
Q  38 actcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcat 137  Q
    ||||||| ||| ||||| |||| || ||||| || || ||||||||||  ||||||||||||| |||||||||  ||||| |||| | ||||||||||||    
T  39137141 actcaagatccatcattcggctatcaaaatggttttgattcaataccatttccttcatttggccttcaaattccatctcttttgatttaaactccttcat 39137042  T
Q  138 ttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttgaccttcaaattct 237  Q
    || |  |||||||||||| ||||||||||| ||| |||| |||||  |||||||||  |||| |||| ||| ||||||| ||||||| | ||||||||||    
T  39137041 ttggtctacaagttggttttcttttgactctaacgccttgacttggatttcaaacagtttctttttaaattgctgctccatcacttggctttcaaattct 39136942  T
Q  238 ctctcctttg 247  Q
    ||||| ||||    
T  39136941 ctctcttttg 39136932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 39222124 - 39221928
Alignment:
Q  28 ttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaa 127  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||  |||  || |||||| ||||   |||| ||||||||  |||||| |||| | ||    
T  39222124 ttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttttgatttaa 39222025  T
Q  128 actccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttg 224  Q
    ||| | ||| || || |||||||||||||||||||||||  |||||||| ||||| |||||||||| ||||| |||||||||| |||||||||||||    
T  39222024 acttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcacttg 39221928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 39222722 - 39222577
Alignment:
Q  102 ttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctgt 201  Q
    |||||||||  ||||  |||| ||||||||||| |||| || || ||||||||||||||||||||| |||||||||||||| ||||||| |  ||||| |    
T  39222722 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 39222623  T
Q  202 ttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    ||||||| | ||||||||||||||  ||||||||||||||| ||||    
T  39222622 ttagattgcagctccttcacttgaatttcaaattctctctcttttg 39222577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 39390607 - 39390782
Alignment:
Q  1 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggc 100  Q
    ||||||||||  |||  ||||| ||| ||||||||  ||||||  ||||||||||||||||| ||||||||||||||  ||| ||  ||| |||||||||    
T  39390607 tgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatccatcatttggc 39390706  T
Q  101 tttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactcctt 176  Q
     |||||||||  ||||| |||| ||||||||||| | || || ||||| || ||||||||||||||| ||||||||    
T  39390707 attcaaattccttctcttttgattcaaactcctttactttgcctacaaatttgttatcttttgactcaaactcctt 39390782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39415286 - 39415538
Alignment:
Q  1 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagc---------tcct 91  Q
    ||||||||||  ||| |||||| ||| ||  ||||| ||||||| || |||| ||||||||| |||||||||||||||||||||| |         ||||    
T  39415286 tgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttctaaatgcttctgtttcaataccatcaataccagttcct 39415385  T
Q  92 tcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaa 191  Q
    |   || || ||||| ||| |||||| |||  ||||||||||||| || || |||| |   |||||  ||||||||||||||||| ||||| ||||||||    
T  39415386 ttgcttcgccttcaatttccctctcttttggttcaaactccttcacttggcctacacg---gttatactttgactccaactcctttacttgtctttcaaa 39415482  T
Q  192 caacttctgtttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
       ||||| |||||||||| ||||| ||||||| | || |||||||||||| ||||    
T  39415483 ttgcttctttttagattccagctccctcacttggcttttaaattctctctcttttg 39415538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 39451455 - 39451279
Alignment:
Q  56 ggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggtt 155  Q
    |||||||  |||| |||||||| ||| ||| |||||||||||| |||||||| ||| | ||| |||  ||||||||||||| || || ||||||||||||    
T  39451455 ggctttcataatgtttctgttttaattccaactccttcatttgactttcaaactctttttcttttgtttcaaactccttcacttggcctacaagttggtt 39451356  T
Q  156 atcttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttgaccttcaa 232  Q
     ||| |||||| |||| |||| | ||| ||||||||   || || |||| ||||| ||||||| | ||| |||||||    
T  39451355 ttctattgactgcaacaccttcaattggctttcaaagtgctcctttttaaattccagctccttgatttggccttcaa 39451279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38792755 - 38792673
Alignment:
Q  1 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaatac 83  Q
    |||||||||| |||| |||||| ||| || |||||| ||||||| ||||||||| || |||||||| ||||||||||||||||    
T  38792755 tgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaaaagcttctgtttcaatac 38792673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 39390534 - 39390671
Alignment:
Q  54 ttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttgg 153  Q
    ||||||||| |||||||||  |||  || |||| ||||||||||||| |||||||||||||||| |||| |||  |||||||| |  || | || ||||     
T  39390534 ttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgc 39390633  T
Q  154 ttatcttttgactccaactccttaacttgcctttcaaa 191  Q
    || ||||||||||| |||||||| | ||| ||||||||    
T  39390634 ttctcttttgactcaaactccttcatttggctttcaaa 39390671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 39602947 - 39602836
Alignment:
Q  56 ggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggtt 155  Q
    ||||||||||||| || ||||| |||| || ||||||| |||||  |||||||||  ||| | |||| ||||||||||| | || || ||||||||||||    
T  39602947 ggctttcgaaatgtttttgttttaatatcaactccttcttttggaattcaaattccttctgttttgattcaaactcctttacttggcatacaagttggtt 39602848  T
Q  156 atcttttgactc 167  Q
    |||| |||||||    
T  39602847 atctattgactc 39602836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 39390078 - 39390176
Alignment:
Q  144 tacaagttggttatcttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttgaccttcaaattctctctc 242  Q
    |||||||| |||| |||| ||||| |||||||||||||| ||||| | |  ||||| |||||||||| | ||||||| ||| |||||||| ||||||||    
T  39390078 tacaagttcgttacctttagactctaactccttaacttggctttcgacctgcttctttttagattccagttccttcatttggccttcaaaatctctctc 39390176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 39391087 - 39391169
Alignment:
Q  28 ttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattc 110  Q
    ||||||||  ||||||| |||||||||||||||||  |||||||||| ||||||||| ||| | ||| ||||| |||||||||    
T  39391087 ttctctttggactcaagctccttcatttggctttcacaatgcttctgcttcaatacctgctgcgtcaattggcattcaaattc 39391169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 38793260 - 38793151
Alignment:
Q  1 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggc 100  Q
    |||||||||| |||  |||||| ||| |||||||| ||||||||   ||||||  ||||||| |||  ||||| |||||||||||| | |||||||| ||    
T  38793260 tgctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacacttctttttcaataccagtttcttcattttgc 38793161  T
Q  101 tttcaaattc 110  Q
    ||||||||||    
T  38793160 tttcaaattc 38793151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 39221731 - 39221626
Alignment:
Q  1 tgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggc 100  Q
    |||||||||| || | |||||| ||| ||||||||  ||||||  |||||||| |||||||| ||||| || ||||| ||  | ||||||||||||||||    
T  39221731 tgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggctttcaaaatgtttttgttttaactcaagctccttcatttggc 39221632  T
Q  101 tttcaa 106  Q
    ||||||    
T  39221631 tttcaa 39221626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 39192611 - 39192743
Alignment:
Q  88 tccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgccttt 187  Q
    ||||||| ||||| ||| |||||||||||| |||| |||  |||||||| || |  | || | || || ||||||||||| |||||||| ||||| | ||    
T  39192611 tccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttcacttggcatt 39192710  T
Q  188 caaacaacttctgtttagattcctgctccttca 220  Q
    |||| | ||||| |||||||||| |||||||||    
T  39192711 caaatagcttctttttagattccagctccttca 39192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 39198291 - 39198423
Alignment:
Q  88 tccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgccttt 187  Q
    ||||||| ||||| ||| |||||||||||| |||| |||  |||||||| || |  | || | || || ||||||||||| |||||||| ||||| | ||    
T  39198291 tccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttcacttggcatt 39198390  T
Q  188 caaacaacttctgtttagattcctgctccttca 220  Q
    |||| | ||||| |||||||||| |||||||||    
T  39198391 caaatagcttctttttagattccagctccttca 39198423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 39192988 - 39193121
Alignment:
Q  3 ctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctt 102  Q
    |||||||| ||| ||||||  ||  |||||||| || ||||| ||||||||  || |||||||||||| ||||||  |||||   ||| ||||||||| |    
T  39192988 ctccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcat 39193087  T
Q  103 tcaaattctctctctattgactcaaactccttca 136  Q
    ||||||||  ||||| |||| ||||||| |||||    
T  39193088 tcaaattccttctcttttgattcaaacttcttca 39193121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 39198668 - 39198801
Alignment:
Q  3 ctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctt 102  Q
    |||||||| ||| ||||||  ||  |||||||| || ||||| ||||||||  || |||||||||||| ||||||  |||||   ||| ||||||||| |    
T  39198668 ctccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcat 39198767  T
Q  103 tcaaattctctctctattgactcaaactccttca 136  Q
    ||||||||  ||||| |||| ||||||| |||||    
T  39198768 tcaaattccttctcttttgattcaaacttcttca 39198801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 39136646 - 39136598
Alignment:
Q  29 tctctttcaactcaagttccttcatttggctttcgaaatgcttctgttt 77  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||||||    
T  39136646 tctctttcgactcaagctccttaatatggctttcgaaatgcttctgttt 39136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 247
Target Start/End: Complemental strand, 39222429 - 39222241
Alignment:
Q  59 tttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatc 158  Q
    |||| |||||||||| |||  || |||| ||||||| ||||| ||| ||| |||||||| |||| | |  |||||||| || || | ||||||| || ||    
T  39222429 tttcaaaatgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctc 39222330  T
Q  159 ttttgactccaactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    ||| ||||| |||||||| | ||| ||||| ||   ||||  |||||||||| ||| |||| | || ||||||||||| ||||| ||||    
T  39222329 tttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttg 39222241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 39389405 - 39389533
Alignment:
Q  38 actcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcat 137  Q
    ||||||| |||||||||||| |||||| | ||||||| ||  ||| ||  ||| ||||||||| |||||||||  | ||| |||  ||||||| ||| ||    
T  39389405 actcaagctccttcatttggttttcgatacgcttctgatttgatagcaagtccatcatttggcattcaaattccttttcttttgtttcaaacttctttat 39389504  T
Q  138 ttcgcgtacaagttggttatcttttgact 166  Q
    || || || ||||| ||||||||||||||    
T  39389505 tttgcctataagttcgttatcttttgact 39389533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 39389709 - 39389761
Alignment:
Q  195 cttctgtttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    ||||| |||||||||| |||||||| ||||||||||||||||  |||||||||    
T  39389709 cttctttttagattccagctccttcgcttgaccttcaaattccttctcctttg 39389761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 39390324 - 39390392
Alignment:
Q  54 ttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattga 122  Q
    ||||||||| |||||||||  |||  || |||| ||||||||||||| |||||||||||||||| ||||    
T  39390324 ttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttga 39390392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 39458607 - 39458568
Alignment:
Q  38 actcaagttccttcatttggctttcgaaatgcttctgttt 77  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  39458607 actcaagctccttcattcggctttcgaaatgcttctgttt 39458568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 39415475 - 39415553
Alignment:
Q  58 ctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttca 136  Q
    ||||| || ||||||| |||  || |||||||| ||| |||||||| ||||||||||||| |||| ||| |||||||||    
T  39415475 ctttcaaattgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactccttca 39415553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 39603296 - 39603218
Alignment:
Q  169 aactccttaacttgcctttcaaacaacttctgtttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    |||||||  ||||| ||||||||   ||||| |||||||||| |||||||| |||||  ||||||||||||||| ||||    
T  39603296 aactcctccacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttg 39603218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 38793058 - 38793013
Alignment:
Q  202 ttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    ||||||||  ||||||||||||||||||||||||||| || |||||    
T  38793058 ttagattctagctccttcacttgaccttcaaattctcgcttctttg 38793013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 39221980 - 39221887
Alignment:
Q  46 tccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcattt 139  Q
    ||||||| ||||||||| ||  |||||| |||  || |||||||||||| |||||| |||| ||   ||||| | |||||||||||||||||||    
T  39221980 tccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaaactccttcattt 39221887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 39222190 - 39222097
Alignment:
Q  46 tccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcattt 139  Q
    ||||||| ||||||||| ||  |||||| |||  || |||||||||||| |||||| |||| ||   ||||| | |||||||||||||||||||    
T  39222190 tccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaaactccttcattt 39222097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 39603285 - 39603204
Alignment:
Q  54 ttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttc 135  Q
    ||||||||| |||||||||| |||  || |||||||||||  |||  ||||||||||||||||| |||| |||  |||||||    
T  39603285 ttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttc 39603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 39221914 - 39221870
Alignment:
Q  28 ttctctttcaactcaagttccttcatttggctttcgaaatgcttc 72  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||    
T  39221914 ttctctttagactcaaactccttcatttggctttcgaaatgcttc 39221870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 33560337 - 33560229
Alignment:
Q  28 ttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaa 127  Q
    ||||||||  ||| ||| |||||||||||||||||  |||||| ||||||||||||  |||||||||||||| ||||||| ||  ||||| |||| ||||    
T  33560337 ttctcttttgactgaagctccttcatttggctttctcaatgctcctgtttcaatacatgctccttcatttggttttcaaaatccttctcttttgattcaa 33560238  T
Q  128 actccttca 136  Q
    |||||||||    
T  33560237 actccttca 33560229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 33560656 - 33560511
Alignment:
Q  87 ctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcctt 186  Q
    |||||||| ||||| |||||||||  ||| | || | | ||||||||||| || || |||||||||  | ||||||||||| |||||||||||||| |||    
T  33560656 ctccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctt 33560557  T
Q  187 tcaaacaacttctgtttagattcctgctccttcacttgaccttcaa 232  Q
    |||||    |||| |||||||||| |||||||||| ||||| ||||    
T  33560556 tcaaagtggttctttttagattccagctccttcacctgaccatcaa 33560511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 33560781 - 33560651
Alignment:
Q  46 tccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgta 145  Q
    |||||||||||| |||||| ||||||||||||  ||| ||  ||| ||||||||| |||||| ||  ||||| |||| ||||||  ||| | || || ||    
T  33560781 tccttcatttggttttcgacatgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgccta 33560682  T
Q  146 caagttggttatcttttgactccaactcctt 176  Q
    |||||| |||||||||||| |||||||||||    
T  33560681 caagttcgttatcttttgattccaactcctt 33560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 19807362 - 19807293
Alignment:
Q  178 acttgcctttcaaacaacttctgtttagattcctgctccttcacttgaccttcaaattctctctcctttg 247  Q
    ||||| |||||||||| ||||| |||||||| ||||||| ||| ||| | ||||||||||||||| ||||    
T  19807362 acttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttg 19807293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 19807007 - 19806959
Alignment:
Q  29 tctctttcaactcaagttccttcatttggctttcgaaatgcttctgttt 77  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||||||    
T  19807007 tctctttcgactcaagctccttaatatggctttcgaaatgcttctgttt 19806959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 19807328 - 19807190
Alignment:
Q  86 gctccttcatttggctttcaaattctctctctattgactcaaactccttcatttcgcgtacaagttggttatcttttgactccaactccttaacttgcct 185  Q
    ||||| |||||||||||||||||||||||||| ||||  ||  |||||||||   || | || | || || ||||||||||| | |||||| | | |  |    
T  19807328 gctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattcggtt 19807229  T
Q  186 ttcaaacaacttctgtttagattcctgctccttcacttg 224  Q
    |||||||  | ||| |||||||||| |||||||||||||    
T  19807228 ttcaaactgcctctttttagattccagctccttcacttg 19807190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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