View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3652_low_6 (Length: 244)
Name: NF3652_low_6
Description: NF3652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3652_low_6 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 36699088 - 36699316
Alignment:
| Q |
1 |
tcgactcggatcctctcccaaaaagcagctgtatggattaactagttaaaaaattgttgcaactgcaccgtgagagaggatctgaatcttgttaaatcac |
100 |
Q |
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| T |
36699088 |
tcgactcggatcctctccgaaaaagcagctgtatggattaactagttaaaaaattgttgcaactgcaccgtgagagaggatctgaatcttgttaaatcac |
36699187 |
T |
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| Q |
101 |
acattgaataaccatttgaatttcttcttaccatatttgtatccattttctcttagatacataaaggactcataaagatctgaatgcataaaagtaaagc |
200 |
Q |
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| T |
36699188 |
acattgaataaccatttgaatttcttcttaccatatttgtatccaatttctcttagatacataaaggactcataaagatctgaatgcataaaagtaaagc |
36699287 |
T |
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| Q |
201 |
caggaagttgagactgcagcttttgaagt |
229 |
Q |
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| T |
36699288 |
caggaagttgagactgcagcttttgaagt |
36699316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 144087 - 144315
Alignment:
| Q |
1 |
tcgactcggatcctctcccaaaaagcagctgtatggattaactagttaaaaaattgttgcaactgcaccgtgagagaggatctgaatcttgttaaatcac |
100 |
Q |
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||||||| | |||| ||||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
144087 |
tcgactcaggtcctttcccacgaagcagctgtatggattaaccagttaaaaaatggttatagctgcaccgtgagagaggatctgaatcttgctaaatcaa |
144186 |
T |
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| Q |
101 |
acattgaataaccatttgaatttcttcttaccatatttgtatccattttctcttagatacataaaggactcataaagatctgaatgcataaaagtaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||| |
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| T |
144187 |
acattgaataaccatttgaatttcttcttaccatatttgtgtccattttctcttagatacatgaaggactcataaagatctgagtggataaaagaaaagc |
144286 |
T |
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| Q |
201 |
caggaagttgagactgcagcttttgaagt |
229 |
Q |
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| T |
144287 |
caggaagttgagactgcagcttttgaagt |
144315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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