View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_1 (Length: 594)
Name: NF3653_low_1
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 1541490 - 1541327
Alignment:
| Q |
36 |
gagctatgttcttccgttgatgattgagatgagataacatgctgggtaggaatacgataccgtaaggcggtgtttgtttcatgg-ctgtaaaaattattc |
134 |
Q |
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| T |
1541490 |
gagctatgttcttccgttgatgattgagatgagataacatgctgggtagcaatacgatacagtaaggcggtgtttgtttcatggtttgtaaaaattattc |
1541391 |
T |
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| Q |
135 |
agtagaatatagaagttacaaatataggttccacctagctatcgtaaaaaggtgtacatgtact |
198 |
Q |
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| T |
1541390 |
actagaatatagaagttacaaatataggttccacctagctatcgtaaaaaggtgtacatgtact |
1541327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 292 - 520
Target Start/End: Complemental strand, 1541242 - 1541022
Alignment:
| Q |
292 |
atatacaaacgtgagtagtgtgtgaaatttggaatagtaagtaagatgcgtacactctctctctagagtttcctatttggtgaatactaacgtaagatgc |
391 |
Q |
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| T |
1541242 |
atatacaaacgtgagtagtgtgtgaaatttggaatagtaagtaagatgcgtacact----ctctagagtttcctatttggtgaatactaacataagatgc |
1541147 |
T |
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| Q |
392 |
gtttctactcctccnnnnnnnnnnnnnnnnnnnnnngatgctcgaaaccacacggcataccaatgtatgccctctatgtacgtaggtaggagtgaaatac |
491 |
Q |
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| T |
1541146 |
gtttctactcctccaactaactaactaactaactaagatgctcgaaaccacacggcataccaatgtatgccctctatgtac----gtaggagtgaaatac |
1541051 |
T |
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| Q |
492 |
acccaacttagtttcatttgatgatgtaa |
520 |
Q |
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| T |
1541050 |
acccaacttagtttcatttcatgatgtaa |
1541022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 1541303 - 1541240
Alignment:
| Q |
196 |
actccataaagaatgaaaacttgtgttggaaagcaacatgaaactaaccatgttcacattgata |
259 |
Q |
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| T |
1541303 |
actccataaagaatgaaaacttgtgttggaaagcaacatgaaactaaccatgttcacattgata |
1541240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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