View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_13 (Length: 241)
Name: NF3653_low_13
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 15848740 - 15848520
Alignment:
| Q |
18 |
gtctgtagattcgttatttagaattataggttgattgaaaaatggttcaagataatacatttatgaatgaggattaatgttatttggtggttatacagtg |
117 |
Q |
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| T |
15848740 |
gtctgtagattcgttatttataattataggttgattgaaaaatggttcaagttaatacatttatgaataaggattaatattatttggt---tatacaacg |
15848644 |
T |
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| Q |
118 |
atattaatttcttttctacatgttttcaattcagtttattggatcggaagaaactgatcagaaagccgttgaggtcccaaacttgggaatttctagttta |
217 |
Q |
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| T |
15848643 |
ttattcatttcttttctacatgtttgcaattcagtttattggatcagaagaaactgatcagaaagccgttgaggtcccaaacttgggaatttctagttta |
15848544 |
T |
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| Q |
218 |
tggacaccagaaaatcactattac |
241 |
Q |
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| T |
15848543 |
tggacacctgagaatcactattac |
15848520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 47439912 - 47440021
Alignment:
| Q |
129 |
ttttctacatgttttcaattcagtttattggatcggaagaaactgatcagaaagccgttgaggtcccaaacttgggaatttctagtttatggacaccaga |
228 |
Q |
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| T |
47439912 |
ttttctacatgtttgcaattcagtttattggatcgaaagaaactgatcagaaagctgatgaggtcccaaaattgggaattactagtttatggacaccaga |
47440011 |
T |
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| Q |
229 |
aaatcactat |
238 |
Q |
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| T |
47440012 |
aaatcactat |
47440021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 10701220 - 10701330
Alignment:
| Q |
128 |
cttttctacatgttttcaattcagtttattggatcggaagaaactgatcagaaagccgttgaggtcccaaacttgggaatttctagtttatggacaccag |
227 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | || ||| ||||| ||||||||| |||| ||||||||||||| |
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| T |
10701220 |
cttttctacatgtttgcaattcagtttattggatcgaaagaaactgatcagaaagctgatggggtaccaaaattgggaattactagcttatggacaccag |
10701319 |
T |
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| Q |
228 |
aaaatcactat |
238 |
Q |
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| T |
10701320 |
aaaatcactat |
10701330 |
T |
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