View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_14 (Length: 238)
Name: NF3653_low_14
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_14 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10470468 - 10470688
Alignment:
| Q |
18 |
ttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttatcggtagttaaccaacaattatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10470468 |
ttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaattatg |
10470567 |
T |
|
| Q |
118 |
gttcgtagagtaaagnnnnnnnnnnnngagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattc |
217 |
Q |
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|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10470568 |
gttcatagagcaaagaaaaaataaaaagagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattc |
10470667 |
T |
|
| Q |
218 |
atgaaataaatcaaaaaatct |
238 |
Q |
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||||||||||| ||||||||| |
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| T |
10470668 |
atgaaataaataaaaaaatct |
10470688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 43511936 - 43512132
Alignment:
| Q |
32 |
gttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttatcggtagttaaccaacaattatggttcgtagagtaaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
43511936 |
gttaaagacccctctttcttcgaccttgaattttgtaggatatattttctaacttaatttttataggtagttaaccaacaattatggttcgtagagcaaa |
43512035 |
T |
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| Q |
132 |
gnnnnnnnnnnnngagaagtggatttgattgcttttgcaaa-gacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaa |
227 |
Q |
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| T |
43512036 |
gaaaaaataaaaagagaagtggatttgattgcttttgcaaaggacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaa |
43512132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 34238422 - 34238211
Alignment:
| Q |
17 |
attttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttatcggtagttaaccaacaattat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34238422 |
attttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaattat |
34238323 |
T |
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| Q |
117 |
ggttcgtagagtaaagnnnnnnnnnnnngagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcatt |
216 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
34238322 |
ggttcgtagagcaaagaaaaaataaaaagagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagcaacaagaaaaacggcatt |
34238223 |
T |
|
| Q |
217 |
catgaaataaat |
228 |
Q |
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|||||||||||| |
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| T |
34238222 |
catgaaataaat |
34238211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 20423310 - 20423530
Alignment:
| Q |
18 |
ttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttatcggtagttaaccaacaattatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
20423310 |
ttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagctaaatttttataggtagttaaccaacaattatg |
20423409 |
T |
|
| Q |
118 |
gttcgtagagtaaagnnnnnnnnnnnngagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattc |
217 |
Q |
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|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
20423410 |
gttcatagagcaaagaaaaaataaaaagagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttaatagtaacaaagaaaactgcattc |
20423509 |
T |
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| Q |
218 |
atgaaataaatcaaaaaatct |
238 |
Q |
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||||||||||| ||||||||| |
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| T |
20423510 |
atgaaataaataaaaaaatct |
20423530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 42293964 - 42293770
Alignment:
| Q |
44 |
tctttcttcgaccttgaattttgtaggatagattttctagcttaatttttatcggtagttaaccaacaattatggttcgtagagtaaagnnnnnnnnnnn |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42293964 |
tctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaattatggttcgtagagtaaagaaaaaataaaa |
42293865 |
T |
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| Q |
144 |
ngagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
42293864 |
agagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttaatagtaacaagaaaaattgcattcatgaaataaataaaaaaatct |
42293770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 45432638 - 45432458
Alignment:
| Q |
40 |
cccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttatcggtagttaaccaacaattatggttcgtagagtaaagnnnnnnn |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45432638 |
cccctctttcttcgaccttgaattttgtaggatagattttctagct------------------aaccaacaattatggttcgtagagtaaagaaaaaat |
45432557 |
T |
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| Q |
140 |
nnnnngagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45432556 |
aaaaagagaagtggatttgattgcttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaataaaaaaatct |
45432458 |
T |
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