View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_2 (Length: 416)
Name: NF3653_low_2
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_2 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 25 - 416
Target Start/End: Original strand, 15848097 - 15848492
Alignment:
| Q |
25 |
atcaacaatacatgtatggtgcacccttcattaggagaaaatctctagacagatttatatcagtatattgaattaaaatatataatgttttattgcctac |
124 |
Q |
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| T |
15848097 |
atcaacaatacatgtatggtgtacccttcattaggagaaaatctctagacagatatatatcagtatatcgaattaaaatatatattgttttattgcctac |
15848196 |
T |
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| Q |
125 |
cttctgtttacgaagattagcagcctggttccttaagcttttctcctcatcttgaaaccttttgatagtttcctccagggaagcaatttgttcttgaagg |
224 |
Q |
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| T |
15848197 |
cttctgtttacgaagattagcagcctgattccttaatcttttctcctcatcttgaaaccttttgatattttcctccaggtgagcaatttgttcttgcagc |
15848296 |
T |
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| Q |
225 |
tccttttctttgaagctcagattatcaatgtccctcacatttaaatctttagtac-nnnnnnnnnnnnnngagagacaataaggaaccagcatt------ |
317 |
Q |
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| T |
15848297 |
tccctttcct---ggctcagattctcaatgtccctcacatttaaatctttattacaacaaaaggtaaaaagagagacaataaggaaccagcatttcaatc |
15848393 |
T |
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| Q |
318 |
taaaacacacgatccaaatattggttcaacatgctttaagagtaacatactattcactagaagtttcggacgttgcacttgttcaacaactgctgagac |
416 |
Q |
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| T |
15848394 |
taaatcacatgatccaaatgttggtttaacatgattttagagtgacatactattcactagaagtttcgggcgttgcaattgctcaacaatcgctgagac |
15848492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 15863776 - 15863931
Alignment:
| Q |
25 |
atcaacaatacatgtatggtgcacccttcattaggagaaaatctctagacagatttatatcagtatattgaattaaaatatataatgttttattgcctac |
124 |
Q |
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| T |
15863776 |
atcatcaatacatgtatgttgtacccttcattaggagaaaatctctaggtagattaataccagtatattgaactaaaatattaaatgttttatagcctac |
15863875 |
T |
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| Q |
125 |
cttctgtttacgaagattagcagcctggttccttaagcttttctcctcatcttgaa |
180 |
Q |
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| T |
15863876 |
cttctttttacgaagaatagcagcctgattccttaagcttttctcctcatcttgaa |
15863931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 120 - 272
Target Start/End: Complemental strand, 47440361 - 47440209
Alignment:
| Q |
120 |
cctaccttctgtttacgaagattagcagcctggttccttaagcttttctcctcatcttgaaaccttttgatagtttcctccagggaagcaatttgttctt |
219 |
Q |
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| T |
47440361 |
cctaccatctgtttacgaagattagcagcctgattcacagagcttttttcctcgtcttgaaactttttgagactttcctccaaggaagcaatttgttctt |
47440262 |
T |
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| Q |
220 |
gaaggtccttttctttgaagctcagattatcaatgtccctcacatttaaatct |
272 |
Q |
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| T |
47440261 |
gaagctccctttcctgagagctcagatcctcaatgtccctcacatttgaatct |
47440209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 416
Target Start/End: Complemental strand, 47440180 - 47440052
Alignment:
| Q |
294 |
gagagacaataaggaaccagcatttaaaac------acacgatccaaatattggttcaacatgctttaagagtaacatactattcactagaagtttcgga |
387 |
Q |
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| T |
47440180 |
gagagacaataaggaaccagcatttaaaactaagtcacgtgacccaaatgttggttaaacatgcttttagagtggcatactattcgttagaagtcgaggg |
47440081 |
T |
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| Q |
388 |
cgttgcacttgttcaacaactgctgagac |
416 |
Q |
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| T |
47440080 |
cgttgcacttgttcaacaactgctgagac |
47440052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 416
Target Start/End: Complemental strand, 10701656 - 10701361
Alignment:
| Q |
132 |
ttacgaagattagcagcctggttccttaagcttttctcctcatcttgaaaccttttgatagtttcctccagggaagcaatttgttcttgaaggtcctttt |
231 |
Q |
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|||||||||||||||||||| ||| |||||| | ||||| ||||||||| |||| | | ||||||||| ||||||||| ||||| ||||| ||| ||| |
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| T |
10701656 |
ttacgaagattagcagcctgattcacaaagcttctttcctcgtcttgaaactttttaagactttcctccaaggaagcaatatgttcatgaagctcccttt |
10701557 |
T |
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| Q |
232 |
ctttgaagctcagattatcaatgtccctcacatttaaatct--ttagt---acnnnnnnnnnnnnnngagagacaataaggaaccagcatttaaaa---- |
322 |
Q |
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| | | ||||||||| |||||||||||||||||||||||| |||| || |||||| | |||||||||||||||||||| |
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| T |
10701556 |
cctcggagctcagatcctcaatgtccctcacatttaaatctaaatagtacaacaaaaagtagagagagagagagagtaaggaaccagcatttaaaactaa |
10701457 |
T |
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| Q |
323 |
--cacacgatccaaatattggttcaacatgctttaagagtaacatactattcactagaagtttcggacgttgcacttgttcaacaactgctgagac |
416 |
Q |
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| T |
10701456 |
atcatatgatcaaaatgttggttgaccaagcttttagagtgacatactattcagtagaagttgagggcgttgcacttgttcaacaactgctgagac |
10701361 |
T |
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