View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_3 (Length: 416)
Name: NF3653_low_3
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 164 - 399
Target Start/End: Original strand, 2851059 - 2851303
Alignment:
| Q |
164 |
aaacttcacaagacttttacaatttttgtaaacaacaccattccaacgtagaattttcagaaccggaaaattaaaatcgaaatctcttacgattatcttt |
263 |
Q |
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| T |
2851059 |
aaacttcacaagacttttacgatttttgtaaagaacaccattccaacgtagaattttcagaaccggaaaattaaaatcgaaatctcttacgattatcttt |
2851158 |
T |
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| Q |
264 |
ttcaaatgcagaacttgaagattcatacaagtaaaaacacgaggaggcaattcaactgctaggatattgcgagaaacgactgtaagaaagtagagattct |
363 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2851159 |
ttcaaattcagaacttgaagattcatacaagtaaaaacacgaggaggcaattcaactgctaggatattgcgagaaacgactgtaagaaagtagagattct |
2851258 |
T |
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| Q |
364 |
cgattc---------ttaaaactaagttaagaatctgattgagac |
399 |
Q |
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||||| | |||||||||||||||||||||||||||| |
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| T |
2851259 |
tgattcgtgagtttttaaaaactaagttaagaatctgattgagac |
2851303 |
T |
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