View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_4 (Length: 409)
Name: NF3653_low_4
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Complemental strand, 33453771 - 33453374
Alignment:
| Q |
2 |
cacatttggctaaacttacaagttttagagaacttattgttcgattttatttagttgtacattaatgatatgcttcagcgccgctaattttagagttcac |
101 |
Q |
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| T |
33453771 |
cacatttggctaaagttacaagttttagagaacttattgttcgattttatttagttgtacattaatgatatgcttcagcgccgctaattttagagttcac |
33453672 |
T |
|
| Q |
102 |
agctaagagctctatagtgctatacacaaaaagtagcaagcaaatacatgctaggatgcaaattgagcatgaatatactacaattaaaatatgcatgtaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33453671 |
agctaagagctctatagtgctatacacaaaaagtagcaagcaaatacatgctaggatgcaaattgagcatgaatatacta-aattaaaatatgcatgtaa |
33453573 |
T |
|
| Q |
202 |
ccaaactaatcggttgctcccaatagttttatgcttcacacctcgatcatcaatgcatgagtcttaattaataacaaaaactgatggataaaatagccaa |
301 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33453572 |
ccaaactaatcggttactcccaatagttttatgcttcacacctcgatcatcaatgcatgagtcttaattaataacaaaaactgatggataaaatagccaa |
33453473 |
T |
|
| Q |
302 |
tgtagctaggtgtagccaataaatctaatataaactttagtaatttggagtatataataacatagtcttgtttcattttgtacttagttatagtattat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33453472 |
tgtagctaggtgtagccaataaatctaatataaactttagtaatttggagtatataataacatagtcttgtttcattttgtacttagttatagtattat |
33453374 |
T |
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