View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_5 (Length: 407)
Name: NF3653_low_5
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 41379293 - 41379679
Alignment:
| Q |
13 |
aaaattataccaaagcaaaatatgtgttttggtttctctaggtatcacctaattcgttagaaactgcagtctgcagagacaaactctttcaaggatcttc |
112 |
Q |
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| T |
41379293 |
aaaattataccaaagcaaaatatgtgttttggtttctctaggtatcacctaattcgttagaaactgtagtctgcagagaca--ctctttcgaggatcttc |
41379390 |
T |
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| Q |
113 |
agcgcatataacggttatgtat----------------tcttacgcataagtcaataatcgaaccccacatcatatgcttaagtaatgtgagtcacttcc |
196 |
Q |
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||||||||||||| |||||| | || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41379391 |
agcgcatataacgattatgtctattaaatggtgaaatttcctacgcataagtcaatagtcgaaccccacatcatatgcttaagtaatgtgagtcacttcc |
41379490 |
T |
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| Q |
197 |
ccctcagaccacaccattttggcagtaaaatcatgtctaatgatatgccaaccattagcttagacacatcatatgcttttgttgttcaagaatccgatct |
296 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
41379491 |
ccctcagaccacatcattttggtagtaaaatcatgtctaatgatatgctaaccattagcttagacacttcatatgtttttgttgttcaagaatctgatct |
41379590 |
T |
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| Q |
297 |
cgaacacgccaaatccaacaagattaaacagaatttcgatcttaatttggattttggtctctctgatgacctcataggaatcgtgtcac |
385 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
41379591 |
cgaacacgccaaatccaacaagactaaacagaatttcgatcttaatttggatttcggtctctctgatgagctcacaggaatcgtgtcac |
41379679 |
T |
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