View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3653_low_6 (Length: 379)
Name: NF3653_low_6
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3653_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 16330140 - 16330491
Alignment:
| Q |
18 |
ctaactctttctacattgtactttcatgcagaacactctaggaaacctcttaattgggcagccaggatcaaagtggcaattggggctgcaaaaggcttgt |
117 |
Q |
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| T |
16330140 |
ctaactctttctacattgtactttcatgcagaacactctaggaaacctcttaattgggcagccaggatcaaagtggcaattggggctgcaaaaggcttgt |
16330239 |
T |
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| Q |
118 |
tgtatttgcatgagaataacatcatacacagagatatgagaccaagtaacatccttgttacacatgattttgaagcaatggtaatgaagtacagagattt |
217 |
Q |
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| T |
16330240 |
tgtatttgcatgagaataacatcatacacagagatatgagaccaagtaacatccttgttacacatgattttgaagcaatggtaatgcagtacagagattt |
16330339 |
T |
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| Q |
218 |
agagactaataattgaatttgaaatactatatcattgatataatcttttaaaagcatatgctattgaaaggttgagaactcattcaactatattatgatg |
317 |
Q |
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| T |
16330340 |
agagactaataattgaatttgaaatactatatcattgatataatcttttaaaagcatatgctattgaaaggttgagaactcattcaactatattatgatg |
16330439 |
T |
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| Q |
318 |
cttgatacttaacatgacttgtgtaggatcctagtctaaacatgtgcctatg |
369 |
Q |
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| T |
16330440 |
cttgatacttaacatgacttgtgtaggatcctagtctaaacatgtgcctatg |
16330491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 2925889 - 2925818
Alignment:
| Q |
130 |
agaataacatcatacacagagatatgagaccaagtaacatccttgttacacatgattttgaagcaatggtaa |
201 |
Q |
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| T |
2925889 |
agaacaacatcatacatagagatataaaaccaaacaacattcttcttacacatgattatgaagctatggtaa |
2925818 |
T |
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