View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3653_low_7 (Length: 347)

Name: NF3653_low_7
Description: NF3653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3653_low_7
NF3653_low_7
[»] chr2 (1 HSPs)
chr2 (45-335)||(25746635-25746925)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 45 - 335
Target Start/End: Complemental strand, 25746925 - 25746635
Alignment:
Q  45 tgatattgcagaaattaatatggtctattgtttgaatattttcttatttcatgaagctttatctttttaatgtaacatcttatacatttttacaatgaca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25746925 tgatattgcagaaattaatatggtctattgtttgaatattttcttatttcatgaagctttatctttttaatgttacatcttatacatttttacaatgaca 25746826  T
Q  145 ggaagcatatagacagaaactggatgacaaattgaatttggattcagaagggagaccgtttcggatgttggtatttaggggaagtccaaaatcaagtaaa 244  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25746825 ggaagcatatagacagaaactggatgacaaactgaatttggattcagaagggagaccgtttcggatgttggtatttaggggaagtccaaaatcaagtaaa 25746726  T
Q  245 aaatctattcgttatattgatcagctgcgagaagaagatgctgcagcacttcaaaacagttccaatcaacgtatccatcgaaggctgccta 335  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25746725 aagtctattcgttatattgatcagctgcgagaagaagatgctgcagcacttcaaaacagttccaatcaacgtatccatcgaaggctgccta 25746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University