View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_high_1 (Length: 519)
Name: NF3654_high_1
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 37191147 - 37190647
Alignment:
| Q |
1 |
caaaagttgtcgcaattctcaagtcccaatcagtctcacaaagctcaagttggtagataagttaatcaaaagatgtctgatattaaggattaaattgact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37191147 |
caaaagttgtcgcaattctcaagtcccaatcagtctcacaaagctcaagtta--aaataagttaatcaaaacatgtctgatattaaggattaaattgact |
37191050 |
T |
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| Q |
101 |
tatcgaaaagggccttacctcggtaatctgaagaacaacgtcgtctctacggagaaacttcccaagcaaacgaggggcaaggtctagtgcgtcgatttga |
200 |
Q |
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| T |
37191049 |
tatcgaaaagggccttacctcggtaatctgaagaacaacgtcgtctctacggagaaacttcccaagcaaacgaggggcaaggtctagtgcgtcgatttga |
37190950 |
T |
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| Q |
201 |
aagaactcgcgaggcaaaggttttgcattttcgaatgaaatgtgcggttctgatgaagatgatgggttgggtaatatggaacgccgcgttttacgtggcg |
300 |
Q |
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| T |
37190949 |
aagaactcgcgaggcaaaggttttgtattttcgaatgaaatgtgcggttctgatgaagatgatgggttgggtaatatggaacgccgcgttttacgtggcg |
37190850 |
T |
|
| Q |
301 |
gggtggttgggggtttggcgactcgcttgaagcgttgtggttttggggtcattacgacggtgttgctgtggtaacggaatgaatcaagtgaagaagattc |
400 |
Q |
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| T |
37190849 |
gggtggttgggggtttggctactcgcttgaagcgttgtggttttggggtcattacgacggtgttgctgtggtaacggaatgaatcaagtgaagaagattc |
37190750 |
T |
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| Q |
401 |
gagagttgatgacgtggtggggatggaacgagggaaagacatgcttcatatgtagcttttcttctattgcttctgccgttaacgttgatcgatacataaa |
500 |
Q |
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| T |
37190749 |
gggagttgatgacgtggtcgggatggaacgagggaaagacatgcttcatatgtagcttttcttctattgcttctgccgttaacgttgatcgatacataaa |
37190650 |
T |
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| Q |
501 |
atg |
503 |
Q |
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| T |
37190649 |
atg |
37190647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 13419365 - 13419457
Alignment:
| Q |
163 |
caagcaaacgaggggcaaggtctagtgcgtcgatttgaaagaactcgcgaggcaaaggttttgcattttcgaatgaaatgtgcggttctgatga |
256 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||| |||||| ||||||||||||||||| |||||| |||| |
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| T |
13419365 |
caagcaaacgaggggcaaggtctggtgcatcgatttgaaataactcgcgtggcaaa-gttttgttttttcgaatgaaatgtgtggttcttatga |
13419457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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