View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3654_high_13 (Length: 268)

Name: NF3654_high_13
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3654_high_13
NF3654_high_13
[»] chr4 (15 HSPs)
chr4 (72-260)||(12230807-12230995)
chr4 (141-260)||(13268018-13268137)
chr4 (147-260)||(19727534-19727647)
chr4 (141-253)||(13559361-13559473)
chr4 (141-260)||(18554716-18554830)
chr4 (146-260)||(17419480-17419594)
chr4 (139-260)||(15870940-15871061)
chr4 (139-260)||(15888515-15888636)
chr4 (73-161)||(8808812-8808900)
chr4 (73-161)||(16282892-16282980)
chr4 (72-161)||(11558510-11558599)
chr4 (151-183)||(9886997-9887029)
chr4 (141-255)||(13235237-13235341)
chr4 (149-183)||(20872219-20872253)
chr4 (138-187)||(30275168-30275217)
[»] chr3 (15 HSPs)
chr3 (75-260)||(19186781-19186966)
chr3 (139-260)||(21977104-21977225)
chr3 (139-260)||(21999535-21999656)
chr3 (139-258)||(22161732-22161851)
chr3 (141-253)||(10341062-10341174)
chr3 (141-234)||(10302744-10302837)
chr3 (139-260)||(16357814-16357933)
chr3 (72-161)||(5941660-5941749)
chr3 (76-161)||(17793443-17793528)
chr3 (76-161)||(19101883-19101968)
chr3 (139-255)||(16928556-16928670)
chr3 (72-153)||(21100619-21100700)
chr3 (116-161)||(15958242-15958287)
chr3 (138-179)||(21028871-21028912)
chr3 (138-179)||(25784203-25784244)
[»] chr2 (8 HSPs)
chr2 (139-260)||(29718090-29718211)
chr2 (137-241)||(26861203-26861307)
chr2 (78-155)||(24788601-24788678)
chr2 (141-223)||(18985269-18985351)
chr2 (83-161)||(44583932-44584010)
chr2 (72-161)||(23651789-23651878)
chr2 (119-159)||(21554002-21554042)
chr2 (139-181)||(22497193-22497234)
[»] chr7 (6 HSPs)
chr7 (146-260)||(16068058-16068172)
chr7 (141-253)||(9692984-9693096)
chr7 (84-161)||(22612532-22612609)
chr7 (81-161)||(11657709-11657789)
chr7 (81-161)||(13475071-13475151)
chr7 (138-182)||(18466884-18466928)
[»] scaffold0385 (1 HSPs)
scaffold0385 (139-260)||(16144-16265)
[»] chr8 (8 HSPs)
chr8 (141-260)||(10454067-10454186)
chr8 (137-260)||(15727753-15727879)
chr8 (208-260)||(1683229-1683281)
chr8 (201-257)||(17861385-17861441)
chr8 (212-259)||(1681192-1681239)
chr8 (119-153)||(17883301-17883335)
chr8 (137-178)||(19862363-19862404)
chr8 (137-178)||(19867000-19867041)
[»] chr1 (4 HSPs)
chr1 (141-260)||(21496562-21496680)
chr1 (139-260)||(17451406-17451525)
chr1 (139-175)||(15545327-15545363)
chr1 (137-177)||(43154381-43154421)
[»] chr5 (9 HSPs)
chr5 (146-260)||(25791827-25791941)
chr5 (137-260)||(14137949-14138072)
chr5 (143-234)||(32948837-32948927)
chr5 (189-253)||(23909173-23909237)
chr5 (140-260)||(13938961-13939079)
chr5 (76-161)||(24760922-24761007)
chr5 (146-187)||(25756303-25756344)
chr5 (144-234)||(25581329-25581419)
chr5 (139-183)||(24564983-24565027)
[»] scaffold0010 (1 HSPs)
scaffold0010 (146-260)||(143102-143216)
[»] scaffold0364 (1 HSPs)
scaffold0364 (141-234)||(14588-14681)
[»] scaffold0118 (1 HSPs)
scaffold0118 (155-260)||(11955-12060)
[»] chr6 (7 HSPs)
chr6 (141-260)||(19545140-19545254)
chr6 (146-260)||(14746549-14746663)
chr6 (83-161)||(15119009-15119086)
chr6 (139-193)||(26587843-26587897)
chr6 (146-199)||(22395459-22395512)
chr6 (138-193)||(26588160-26588215)
chr6 (227-260)||(22395518-22395551)
[»] scaffold0408 (1 HSPs)
scaffold0408 (146-260)||(14984-15098)
[»] scaffold0290 (1 HSPs)
scaffold0290 (149-249)||(11838-11938)
[»] scaffold1043 (1 HSPs)
scaffold1043 (146-260)||(516-631)
[»] scaffold0094 (1 HSPs)
scaffold0094 (141-260)||(2496-2609)
[»] scaffold0207 (1 HSPs)
scaffold0207 (144-234)||(737-827)
[»] scaffold0145 (1 HSPs)
scaffold0145 (73-161)||(14735-14823)
[»] scaffold0166 (1 HSPs)
scaffold0166 (76-161)||(3419-3504)
[»] scaffold0381 (1 HSPs)
scaffold0381 (151-183)||(11515-11547)
[»] scaffold0035 (1 HSPs)
scaffold0035 (137-178)||(15397-15438)
[»] scaffold0149 (1 HSPs)
scaffold0149 (137-193)||(35468-35523)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 12230995 - 12230807
Alignment:
Q  72 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatctttgcacttta 171  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  12230995 gagaagcaaagggagagaagcagaaccctcgtgtagcaacatcaagccaaactgaaggtttctacagattcgaggtaagggggataatctttgcacttta 12230896  T
Q  172 gggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 260  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12230895 gggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 12230807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 13268137 - 13268018
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||| | ||||||||||||||    
T  13268137 tcgaggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 13268038  T
Q  241 ttgatgagagaatgatgatg 260  Q
    |||| |||||||||||||||    
T  13268037 ttgacgagagaatgatgatg 13268018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 19727534 - 19727647
Alignment:
Q  147 taagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatg 246  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||| || |||||||||||||||||| |    
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg 19727633  T
Q  247 agagaatgatgatg 260  Q
    ||||||||||||||    
T  19727634 agagaatgatgatg 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 13559361 - 13559473
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | |||||||| ||| |    
T  13559361 tcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagt 13559460  T
Q  241 ttgatgagagaat 253  Q
    |||||||||||||    
T  13559461 ttgatgagagaat 13559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 18554716 - 18554830
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||     |||||||||||||||||| ||||||||||||||    
T  18554716 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaatt 18554810  T
Q  241 ttgatgagagaatgatgatg 260  Q
    ||||||||| ||||||||||    
T  18554811 ttgatgagaaaatgatgatg 18554830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 17419594 - 17419480
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 245  Q
    |||||||| ||||||||||||||||||||||||||||||||| | || ||  || | ||||||||||| |||||||| ||||||||||||||||||||||    
T  17419594 gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactattatgatgtgaattttgat 17419495  T
Q  246 gagagaatgatgatg 260  Q
    |||||||||||||||    
T  17419494 gagagaatgatgatg 17419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 15870940 - 15871061
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    | || || ||||||||| ||    
T  15870940 attcaaggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaa 15871039  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    |||||||||| |||||||||||    
T  15871040 ttttgatgagtgaatgatgatg 15871061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 15888515 - 15888636
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    |||| ||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||||||    | ||||| ||||||||| ||    
T  15888515 attcaaggtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaa 15888614  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    | |||||||| |||||||||||    
T  15888615 tattgatgagtgaatgatgatg 15888636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 8808900 - 8808812
Alignment:
Q  73 agaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    ||||||| | ||||||| || ||||||||||| ||| |  || ||||||||| |||||||||||||||| |||||||||||||||||||    
T  8808900 agaagcagaaggagagaggcggaaccctagtgcagcgatatcgagtcaaaccaaaggtttctacggatttgaggtaagggggagaatct 8808812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 16282892 - 16282980
Alignment:
Q  73 agaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||| || |||||  |||||||| || |||||| || ||||||||| || |||||||||| ||||||||||||||||||||||    
T  16282892 agaagcaaagagaaagaagtggaaccctactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatct 16282980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 11558599 - 11558510
Alignment:
Q  72 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||| | |||||||||  |||||||| || | |||| || || |||||||||||||||||||||||| |||||||| |||||||||    
T  11558599 gagaagcagatggagagaagtggaaccctaatgcaacaacatcgagccaaaccgaaggtttctacggattctaggtaaggaggagaatct 11558510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 9887029 - 9886997
Alignment:
Q  151 ggggagaatctttgcactttagggtatcttaat 183  Q
    |||||||||||||||||||||||||||||||||    
T  9887029 ggggagaatctttgcactttagggtatcttaat 9886997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 13235341 - 13235237
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    |||||||||  ||| |||||||||||||||||||||| ||||| ||| | || ||||          |||||||||||||||  | ||||||||||||||    
T  13235341 tcgaggtaaacgggggaatctttgcactttagggtatattaatttatgacggaaggg----------ttttaatatgttgttagtgttatgatgtgaatt 13235252  T
Q  241 ttgatgagagaatga 255  Q
    |||| ||||||||||    
T  13235251 ttgacgagagaatga 13235237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 20872219 - 20872253
Alignment:
Q  149 agggggagaatctttgcactttagggtatcttaat 183  Q
    |||||||||||||||||||||| ||||||||||||    
T  20872219 agggggagaatctttgcacttttgggtatcttaat 20872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 30275168 - 30275217
Alignment:
Q  138 gattcgaggtaagggggagaatctttgcactttagggtatcttaatctat 187  Q
    ||||||||||||| ||||||||| || |||||||||||| |||| |||||    
T  30275168 gattcgaggtaagtgggagaatcatttcactttagggtaacttattctat 30275217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 19186966 - 19186781
Alignment:
Q  75 aagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatctttgcactttaggg 174  Q
    ||||| |||||||||||| ||||||||| | |||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19186966 aagcagagggagagaagcggaaccctagggcagcaacatcgagccaaaccgaaggtttctacggattcgaggtaaggaggagaatctttgcactttaggg 19186867  T
Q  175 tatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 260  Q
    ||||||||| ||| ||||| ||||  |||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||||    
T  19186866 tatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgatcagtgaatgatgatg 19186781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 21977225 - 21977104
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||  |||||||| ||||||||||||    
T  21977225 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaa 21977126  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    |||||||||| |||||||||||    
T  21977125 ttttgatgagtgaatgatgatg 21977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 21999656 - 21999535
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||  |||||||| ||||||||||||    
T  21999656 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaa 21999557  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    |||||||||| |||||||||||    
T  21999556 ttttgatgagtgaatgatgatg 21999535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 22161851 - 22161732
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||| ||||  |||||||| ||||||||||||    
T  22161851 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaa 22161752  T
Q  239 ttttgatgagagaatgatga 258  Q
    |||||||||| |||||||||    
T  22161751 ttttgatgagtgaatgatga 22161732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 10341174 - 10341062
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||||||| ||||||| | |||||||| |||||    
T  10341174 tcgaagtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaatt 10341075  T
Q  241 ttgatgagagaat 253  Q
    |||||||||||||    
T  10341074 ttgatgagagaat 10341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 10302837 - 10302744
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 234  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | ||||||||    
T  10302837 tcgaagtacgggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 16357814 - 16357933
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||    | ||||| ||||||||| ||    
T  16357814 attcgaggtaagggg-agaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaatgcacttttgctgttatgatgtaaa 16357911  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    | |||||||| |||||||||||    
T  16357912 tgttgatgagtgaatgatgatg 16357933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 5941660 - 5941749
Alignment:
Q  72 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||  |||||||| |||||||||| ||||| |||||||||| ||||||||    
T  5941660 gagaagcatagggagagaagcgaaaccctagtgtagcaacatcgggtcaaaccaaaggtttctatggatttgaggtaagggagagaatct 5941749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 17793528 - 17793443
Alignment:
Q  76 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||| ||| |||||||| ||||| ||||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  17793528 agcagaggaagagaagcggaaccgtagtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatct 17793443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 19101968 - 19101883
Alignment:
Q  76 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||| ||| |||||||| ||||| ||||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  19101968 agcagaggaagagaagcggaaccgtagtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatct 19101883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 16928670 - 16928556
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgg-gagggttttcttaaattttaatatgttgttgctattatgatgtga 237  Q
    |||||||||||||| |||||| ||| |||||||  |||||||||||||| ||||  |||||| |||||||||||||||||||||||   ||||| |||||    
T  16928670 attcgaggtaagggagagaatattttcactttaaagtatcttaatctatgatggaaagggttgtcttaaattttaatatgttgttg---ttatggtgtga 16928574  T
Q  238 attttgatgagagaatga 255  Q
    |||| || ||||| ||||    
T  16928573 atttggacgagaggatga 16928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 21100619 - 21100700
Alignment:
Q  72 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggg 153  Q
    ||||||||  ||||||||||| ||||||||||| |||||| || || ||||||||||||||||| ||||| |||||||||||    
T  21100619 gagaagcagggggagagaagcggaaccctagtgcagcaacatcgagccaaaccgaaggtttctatggatttgaggtaagggg 21100700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 15958242 - 15958287
Alignment:
Q  116 agtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  15958242 agtccaaccgaaggtttctacggatttgaggtaagggggagaatct 15958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 21028912 - 21028871
Alignment:
Q  138 gattcgaggtaagggggagaatctttgcactttagggtatct 179  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  21028912 gattcgaggtaagggggagattcctttcactttagggtatct 21028871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 25784203 - 25784244
Alignment:
Q  138 gattcgaggtaagggggagaatctttgcactttagggtatct 179  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  25784203 gattcgaggtaagggggagattcctttcactttagggtatct 25784244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 29718090 - 29718211
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||| | ||||||||||||    
T  29718090 attcgaggtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaa 29718189  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    ||||||||||||||||||||||    
T  29718190 ttttgatgagagaatgatgatg 29718211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 26861203 - 26861307
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtg 236  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||| | |||||||||||||| || ||||| ||||| |||     
T  26861203 ggattcgaggtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatggtgtt 26861302  T
Q  237 aattt 241  Q
    |||||    
T  26861303 aattt 26861307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 24788678 - 24788601
Alignment:
Q  78 caaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaaggggga 155  Q
    ||||||||||||||| ||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||    
T  24788678 caaagggagagaagcggaaccctagtgcagcaacttctagccaaaccgaaggtttctacggattcgaggtaaggggga 24788601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 18985269 - 18985351
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttg 223  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||| | |||||||||||||||||||||    
T  18985269 tcgagataagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgttg 18985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 44583932 - 44584010
Alignment:
Q  83 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||| ||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  44583932 ggagagaagcggaatcctagtgcagcaacatcaagtcaaaccaaaggtttctacggatttgaggtaagggggagaatct 44584010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 23651789 - 23651878
Alignment:
Q  72 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||||| |||||||| |||||||| || |||||| || || ||||| |||||| ||||| ||||||||||||||||||||||||    
T  23651789 gagaagcaaaggtagagaagcggaaccctaatgcagcaacatcgagccaaactgaaggtatctacagattcgaggtaagggggagaatct 23651878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 21554002 - 21554042
Alignment:
Q  119 caaaccgaaggtttctacggattcgaggtaagggggagaat 159  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21554002 caaaacgaaggtttctacggattcgaggtaagggggagaat 21554042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 22497193 - 22497234
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatctta 181  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  22497193 attcgagctaagggggagaatctttgcac-ttagggtatctta 22497234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 16068058 - 16068172
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 245  Q
    ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  16068058 gtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgat 16068157  T
Q  246 gagagaatgatgatg 260  Q
    |||| ||||||||||    
T  16068158 gagaaaatgatgatg 16068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 9692984 - 9693096
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | |||||||| ||| |    
T  9692984 tcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagt 9693083  T
Q  241 ttgatgagagaat 253  Q
    |||||||||||||    
T  9693084 ttgatgagagaat 9693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 22612532 - 22612609
Alignment:
Q  84 gagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    ||||||||| ||||||||||| | |||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  22612532 gagagaagcggaaccctagtgcaacaacatcgagccaaaccgaaggtttctacggattcgaggtaagggggagaatct 22612609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 11657789 - 11657709
Alignment:
Q  81 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||||  ||||||||||| ||| || ||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  11657789 agggagagaagaggaaccctagtgcagctacatcaagccaaaccaaaggtttctacggattcgaggtaagggtgagaatct 11657709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 13475071 - 13475151
Alignment:
Q  81 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||||| ||||||||||| |||||| || || |||| |||||||||||||||||||||||||| ||| |||||||    
T  13475071 agggagagaagctgaaccctagtgcagcaacatcgaggcaaatcgaaggtttctacggattcgaggtaaagggaagaatct 13475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 18466884 - 18466928
Alignment:
Q  138 gattcgaggtaagggggagaatctttgcactttagggtatcttaa 182  Q
    ||||||| ||||||||||||||||||   ||||||||||||||||    
T  18466884 gattcgatgtaagggggagaatctttttcctttagggtatcttaa 18466928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 16265 - 16144
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 238  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||  |||||||||||||||  |||||||| ||||||||||||    
T  16265 attcgaggtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaa 16166  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    |||||||||| |||||||||||    
T  16165 ttttgatgagtgaatgatgatg 16144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 10454067 - 10454186
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| || || ||||||||||||| ||||| ||||| ||||||||    
T  10454067 tcgaggtaaggggaagaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaatt 10454166  T
Q  241 ttgatgagagaatgatgatg 260  Q
    ||||||||||||||||||||    
T  10454167 ttgatgagagaatgatgatg 10454186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 15727879 - 15727753
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgg------gagggttttcttaaattttaatatgttgttgctattat 230  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||      ||||||| | ||| |||||||||||||||||   ||||    
T  15727879 ggattcgaggtaagggggagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaatatgttgttg---ttat 15727783  T
Q  231 gatgtgaattttgatgagagaatgatgatg 260  Q
    |||||||||||| ||||||| |||| ||||    
T  15727782 gatgtgaatttttatgagaggatgaagatg 15727753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 1683281 - 1683229
Alignment:
Q  208 ttttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 260  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatg 1683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 17861385 - 17861441
Alignment:
Q  201 tcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatg 257  Q
    ||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||    
T  17861385 tcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatg 17861441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 1681239 - 1681192
Alignment:
Q  212 aatatgttgttgctattatgatgtgaattttgatgagagaatgatgat 259  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  1681239 aatatgttgttgcggttatgatgtgaattttgatgagagactgatgat 1681192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 17883335 - 17883301
Alignment:
Q  119 caaaccgaaggtttctacggattcgaggtaagggg 153  Q
    ||||||||||||||||| |||||||||||||||||    
T  17883335 caaaccgaaggtttctatggattcgaggtaagggg 17883301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 19862404 - 19862363
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatc 178  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  19862404 ggattcgaggtaagggggagattcctttcactttagggtatc 19862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 19867041 - 19867000
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatc 178  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  19867041 ggattcgaggtaagggggagattcctttcactttagggtatc 19867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 21496680 - 21496562
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||| ||| |||||| |||||     
T  21496680 tcgaggtaagggggagaatctttgcactttagggtatcttaatcta-tgtgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaata 21496582  T
Q  241 ttgatgagagaatgatgatg 260  Q
    || |||||||||||||||||    
T  21496581 tttatgagagaatgatgatg 21496562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 17451525 - 17451406
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtga- 237  Q
    |||||||| |||||  ||||||||||||||||||||||||||||| ||| || ||||||  |  |||| | |||| ||| ||||||| |||||||||||     
T  17451525 attcgagggaagggatagaatctttgcactttagggtatcttaatatatgat-ggaggg--taattaattcttaagatgatgttgctcttatgatgtgag 17451429  T
Q  238 attttgatgagagaatgatgatg 260  Q
    ||| |||||||||| | ||||||    
T  17451428 attgtgatgagagatttatgatg 17451406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 15545363 - 15545327
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggt 175  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15545363 attcgaggtaaggggtagaatctttgcactttagggt 15545327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 43154381 - 43154421
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtat 177  Q
    ||||||||||||||||||||||||| |  ||||||||||||    
T  43154381 ggattcgaggtaagggggagaatctcttaactttagggtat 43154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 25791941 - 25791827
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 245  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| || |||||||||||| ||||||    
T  25791941 gtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttatgatgtgaactttgat 25791842  T
Q  246 gagagaatgatgatg 260  Q
    |||||||||||||||    
T  25791841 gagagaatgatgatg 25791827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 14138072 - 14137949
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtg 236  Q
    ||||||||||||||||||| ||||| |  |||||||||||||||| | | | ||||||||||| |||||||| |||||||||||||| | ||||| ||||    
T  14138072 ggattcgaggtaagggggacaatctctttactttagggtatcttattatttgatgggagggttgtcttaaatcttaatatgttgttgttgttatgctgtg 14137973  T
Q  237 aattttgatgagagaatgatgatg 260  Q
    |||||||||||  |||| ||||||    
T  14137972 aattttgatgaaggaataatgatg 14137949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 32948927 - 32948837
Alignment:
Q  143 gaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 234  Q
    |||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||| |||| |||||||||||||||||||| ||||||||    
T  32948927 gaggtaagggggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaattttaatatgttgttgctgttatgatg 32948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 23909237 - 23909173
Alignment:
Q  189 atgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaat 253  Q
    ||||||||||| ||||||||||||||| ||||||| | |||||||| ||||||||||||||||||    
T  23909237 atgggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatgagagaat 23909173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 13939079 - 13938961
Alignment:
Q  140 ttcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtga-a 238  Q
    ||||||||||| || |||||||||||||||||| |||||||||| ||| || ||| ||| |  |||| | |||| ||||||||| | ||||||||||| |    
T  13939079 ttcgaggtaagaggaagaatctttgcactttagtgtatcttaatatatgat-ggacggtgt--ttaattcttaagatgttgttgttgttatgatgtgaga 13938983  T
Q  239 ttttgatgagagaatgatgatg 260  Q
    ||||||||||||| | ||||||    
T  13938982 ttttgatgagagatttatgatg 13938961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 24761007 - 24760922
Alignment:
Q  76 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||| |||||||||| | ||||||||||| | ||||  | || ||||||||||||||||| |||||||||||||| ||| ||||||    
T  24761007 agcatagggagagaacctgaaccctagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatct 24760922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 25756303 - 25756344
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctat 187  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  25756303 gtaagagggagaatctttgcactttagggtatcttaatctat 25756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 25581329 - 25581419
Alignment:
Q  144 aggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaa-tatgttgttgctattatgatg 234  Q
    |||||||||||||||||||| |||||||||||||||| |||||| || |||||    |||| |||||||| |||||||||| | ||||||||    
T  25581329 aggtaagggggagaatctttccactttagggtatctt-atctatgattggaggaacgtctttaattttaattatgttgttgttgttatgatg 25581419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 24565027 - 24564983
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaat 183  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||    
T  24565027 attcgaggtaatgggaaaaatctttgcactttagggtctcttaat 24564983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 143216 - 143102
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 245  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| |||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||    
T  143216 gtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 143117  T
Q  246 gagagaatgatgatg 260  Q
    |||||| ||||||||    
T  143116 gagagattgatgatg 143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 14681 - 14588
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||    
T  14681 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 12060 - 11955
Alignment:
Q  155 agaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatg 254  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatg 11961  T
Q  255 atgatg 260  Q
    ||||||    
T  11960 atgatg 11955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 19545140 - 19545254
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||     |||||||||||||||||| |||| |||||||||    
T  19545140 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaatt 19545234  T
Q  241 ttgatgagagaatgatgatg 260  Q
    ||||||||| ||||||||||    
T  19545235 ttgatgagaaaatgatgatg 19545254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 14746663 - 14746549
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 245  Q
    ||||||||||||||||||||||| |||||||||||||||||| | | || ||||  |||||||||||| |||||||| || |||||||||||||||| ||    
T  14746663 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14746564  T
Q  246 gagagaatgatgatg 260  Q
    |||||||||||||||    
T  14746563 gagagaatgatgatg 14746549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 15119086 - 15119009
Alignment:
Q  83 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||||||||||||||| |||||| || ||  ||| ||||||||||||| |||||||||||||||| |||||||    
T  15119086 ggagagaagcagaaccctagtgcagcaacatcgagctaaatcgaaggtttctac-gattcgaggtaaggggaagaatct 15119009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 26587897 - 26587843
Alignment:
Q  139 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 193  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  26587897 attcgaggtaaaggggagaatcttttcactttagggtatcttaatctatgatggg 26587843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 22395459 - 22395512
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggtt 199  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  22395459 gtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggtt 22395512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 26588215 - 26588160
Alignment:
Q  138 gattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 193  Q
    |||||||||||||||||||  || || ||||||||||||||||||||||| |||||    
T  26588215 gattcgaggtaagggggaggttcctttcactttagggtatcttaatctatgatggg 26588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 22395518 - 22395551
Alignment:
Q  227 ttatgatgtgaattttgatgagagaatgatgatg 260  Q
    |||||||||||||||||||||||||| |||||||    
T  22395518 ttatgatgtgaattttgatgagagaaagatgatg 22395551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 15098 - 14984
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 245  Q
    ||||||||||||||||||||||| |||||||||||||||||| | | || ||||  |||||||||||| |||||||| || |||||||||||||||| ||    
T  15098 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14999  T
Q  246 gagagaatgatgatg 260  Q
    |||||||||||||||    
T  14998 gagagaatgatgatg 14984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 11838 - 11938
Alignment:
Q  149 agggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgag 248  Q
    ||||||||||||||||||||||||||| || |||| ||| || |||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatgag 11937  T
Q  249 a 249  Q
    |    
T  11938 a 11938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 516 - 631
Alignment:
Q  146 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaa-ttttaatatgttgttgctattatgatgtgaattttga 244  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||| ||||||| ||||||| |||||| |||||||| || ||||||| |||||||| |    
T  516 gtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttatgatatgaattttta 615  T
Q  245 tgagagaatgatgatg 260  Q
    ||||||||||||||||    
T  616 tgagagaatgatgatg 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 2496 - 2609
Alignment:
Q  141 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||  |||||     ||| |||||||||||||||||||  |||||||||||||    
T  2496 tcgaggtaagggggagaatctttgca-tttagggtatcttaatctatgatatgaggg-----ttatattttaatatgttgttgctggtatgatgtgaatt 2589  T
Q  241 ttgatgagagaatgatgatg 260  Q
    |||| |||| ||||||||||    
T  2590 ttgacgagaaaatgatgatg 2609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 737 - 827
Alignment:
Q  144 aggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaa-tatgttgttgctattatgatg 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||| ||||||||    
T  737 aggtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 14823 - 14735
Alignment:
Q  73 agaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||||||||| || |||||  |||||||| || |||||| || ||||||||| || |||||||||| ||||||||||||||||||||||    
T  14823 agaagcaaagagaaagaagtggaaccctactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatct 14735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 3504 - 3419
Alignment:
Q  76 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 161  Q
    |||| |||||||||| | ||||||||||| | ||||  | || ||||||||||||||||| |||||||||||||| ||| ||||||    
T  3504 agcatagggagagaacctgaaccctagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatct 3419  T

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Target: scaffold0381 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 11515 - 11547
Alignment:
Q  151 ggggagaatctttgcactttagggtatcttaat 183  Q
    |||||||||||||||||||||||||||||||||    
T  11515 ggggagaatctttgcactttagggtatcttaat 11547  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 15397 - 15438
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatc 178  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  15397 ggattcgaggtaagggggagattcctttcactttagggtatc 15438  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 35468 - 35523
Alignment:
Q  137 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 193  Q
    ||||||||||||||||||||| || |  ||||||||||||| ||||||||| |||||    
T  35468 ggattcgaggtaagggggagattcctaccactttagggtat-ttaatctatgatggg 35523  T

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