View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3654_high_19 (Length: 214)

Name: NF3654_high_19
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3654_high_19
NF3654_high_19
[»] chr6 (3 HSPs)
chr6 (1-84)||(22745716-22745799)
chr6 (111-161)||(22745826-22745876)
chr6 (170-212)||(22745900-22745942)
[»] chr5 (1 HSPs)
chr5 (4-82)||(3104671-3104749)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 22745716 - 22745799
Alignment:
Q  1 gtacaaaatgccatacaatcttgtccaagtccaattgtatatttccctttgctaacaccatcatgagcttctaaagcttcctac 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22745716 gtacaaaatgccatacaatcttgtccaagtccaattgtatatttccctttgctcacaccatcatgagcttctaaagcttcctac 22745799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 22745826 - 22745876
Alignment:
Q  111 cacaattattaggggataaagaaaattatagattacgaattagttggttac 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22745826 cacaattattaggggataaagaaaattatagattacgaattagttggttac 22745876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 22745900 - 22745942
Alignment:
Q  170 acaaaggctgatgaaatcacctatgaaaaacacacactgacac 212  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  22745900 acaaaggctgatgaaatcacctatgaaaaacacacacagacac 22745942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 3104749 - 3104671
Alignment:
Q  4 caaaatgccatacaatcttgtccaagtccaattgtatatttccctttgctaacaccatcatgagcttctaaagcttcct 82  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || || |||||||    
T  3104749 caaaatgacatgcaatcttgtccaagtccaattgtatatttccctttactagcaccatcatgagcctccaatgcttcct 3104671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University