View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_high_20 (Length: 214)
Name: NF3654_high_20
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_high_20 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 33952734 - 33952524
Alignment:
| Q |
1 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33952734 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgag |
33952635 |
T |
|
| Q |
101 |
atatttaacaacttaagtagcctagaagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttg |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33952634 |
atatttaacaatttaagtagcctagaagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatgcctaatttgttg |
33952535 |
T |
|
| Q |
201 |
atgatgtccat |
211 |
Q |
| |
|
||||| ||||| |
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|
| T |
33952534 |
atgatttccat |
33952524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 33960040 - 33959824
Alignment:
| Q |
1 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33960040 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
33959941 |
T |
|
| Q |
101 |
atatttaacaacttaagtagcctagaagaaaatataata------ataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaat |
194 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33959940 |
atatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaat |
33959841 |
T |
|
| Q |
195 |
ttgttgatgatgtccat |
211 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
33959840 |
ttgttgatgatttccat |
33959824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 33975340 - 33975124
Alignment:
| Q |
1 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975340 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
33975241 |
T |
|
| Q |
101 |
atatttaacaacttaagtagcctagaagaaaatataata------ataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaat |
194 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33975240 |
atatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaat |
33975141 |
T |
|
| Q |
195 |
ttgttgatgatgtccat |
211 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
33975140 |
ttgttgatgatttccat |
33975124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 33992253 - 33992044
Alignment:
| Q |
1 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33992253 |
gtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtatcattcatgtgag |
33992155 |
T |
|
| Q |
101 |
atatttaacaacttaagtagcctagaagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33992154 |
atatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttg |
33992055 |
T |
|
| Q |
201 |
atgatgtccat |
211 |
Q |
| |
|
||||| ||||| |
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|
| T |
33992054 |
atgatttccat |
33992044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8278022 - 8278231
Alignment:
| Q |
1 |
gtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgag |
100 |
Q |
| |
|
||||||| || |||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8278022 |
gtcactttcactttttcaggtaaatgagcagaggttaattagttacttaaa-gataagaaattatttcacaggatttatgtagagtatcattcatgtgag |
8278120 |
T |
|
| Q |
101 |
atatttaacaacttaagtagcctagaagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttg |
200 |
Q |
| |
|
||||||||||| || | ||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||| |
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|
| T |
8278121 |
atatttaacaattttattagccaagaagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgaggcctaatttattg |
8278220 |
T |
|
| Q |
201 |
atgatgtccat |
211 |
Q |
| |
|
||||| ||||| |
|
|
| T |
8278221 |
atgatttccat |
8278231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2891575 - 2891615
Alignment:
| Q |
1 |
gtcacttgcatttttcctggtaaatgagcagaggttaatta |
41 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| |||||| |
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|
| T |
2891575 |
gtcacttgcattttttctggtaaatgagcaaagggtaatta |
2891615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 12174 - 12115
Alignment:
| Q |
152 |
gtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||||||||||| ||||| ||||| |
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|
| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttccat |
12115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 12284 - 12246
Alignment:
| Q |
2 |
tcacttgcatttttcctggtaaatgagcagaggttaatt |
40 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
12284 |
tcacttgcatttttcctagtatatgagcagaggttaatt |
12246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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