View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3654_low_11 (Length: 296)
Name: NF3654_low_11
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_low_11 |
 | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 33975370 - 33975633
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattgacatgaataacaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975370 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacatgaataacaat |
33975469 |
T |
|
| Q |
117 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975470 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgccc |
33975569 |
T |
|
| Q |
217 |
gtatattgtcggtatcaactggttagtaatacttacctttctctaaatttgaccatctaaaaat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33975570 |
gtatattgtcggtatcaactggttagtaatacttaccttcctctaaatttgaccatctaaaaat |
33975633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 33960070 - 33960337
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattgacatgaataacaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33960070 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacattaataaaaat |
33960169 |
T |
|
| Q |
117 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgccc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
33960170 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgccc |
33960269 |
T |
|
| Q |
217 |
gtatattgtcggtatcaactggttagtaatactta-----cctttctctaaatttgaccatctaaaaa |
279 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
33960270 |
gtatattgtcggtatcagctggttagtaatacttatactccctttttctaactttgaccatctaaaaa |
33960337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 33952764 - 33953031
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattgacatgaataacaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33952764 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcgccaaggaaccatttgagcaaagaaaaagactgattattgacattaataaaaat |
33952863 |
T |
|
| Q |
117 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgccc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
33952864 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgccc |
33952963 |
T |
|
| Q |
217 |
gtatattgtcggtatcaactggttagtaatactta-----cctttctctaaatttgaccatctaaaaa |
279 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
33952964 |
gtatattgtcggtatcagctggttagtaatacttatactccctttttctaactttgaccatctaaaaa |
33953031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 33992283 - 33992517
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattgacatgaataacaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33992283 |
catcatccttcatgatattctaagagatcttggaatttaccaaagcaccaagcaaccatttgagcaaagaaaaagactgattattgacattaataaaaat |
33992382 |
T |
|
| Q |
117 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgccc |
216 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| | |||||||||||| ||||||||||||| |||||||||||||| | |
|
|
| T |
33992383 |
agaagtgagctcgcggagaagcagcaaagcttgttgacccgtatattgtcaaaagtaatgagattgtgtattaaacaaaatccccaacagcttgctgctc |
33992482 |
T |
|
| Q |
217 |
gtatattgtcggtatcaactggttagtaatactta |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33992483 |
acatattgtcggtatcaactggttagtaatactta |
33992517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 33913597 - 33913678
Alignment:
| Q |
22 |
tccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattga |
103 |
Q |
| |
|
||||||||||| |||||||||| || |||| ||| |||| || | ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
33913597 |
tccttcatgatcttctaagagagctaggaaattatcaaaacaaccaggaaccaattgaacaaagaaaaagacttcttattga |
33913678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 33913712 - 33913847
Alignment:
| Q |
131 |
ggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgcccgtatattgtcggta |
230 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| || || ||| | | |||||||||||||| || ||||||||| | |||| || | | |||| || |
|
|
| T |
33913712 |
ggagaagcagcagggcacaatgacccgcatattgtccaatttttttaaattgtgtgttaaaccgaagcctcaacaggtccctgctcgcacagtgtctata |
33913811 |
T |
|
| Q |
231 |
tcaactggttagtaatactt--acctttctctaaat |
264 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| |
|
|
| T |
33913812 |
tcaactggttagttatactttcacctttctctaaat |
33913847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 33942321 - 33942397
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagac |
93 |
Q |
| |
|
|||| ||||||||||| | || ||||| ||||| | ||| |||| |||| ||||||| ||||| ||||||||||||| |
|
|
| T |
33942321 |
catcgtccttcatgatctgctgagagagcttgggaattatcaaaacacccaggaacctattgaacaaagaaaaagac |
33942397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 8277992 - 8277725
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattgacatgaataacaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||| ||| |
|
|
| T |
8277992 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccatttgagcaaagagaaaaactgattattgacaagaataaaaat |
8277893 |
T |
|
| Q |
117 |
aaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgccc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
8277892 |
aaaagtgggctcgcggagaagcagcaaggtttgatgacccgtatattgtcaaagtttatgagattttgtgttaaacaaaatcctcaacatttcgctgccc |
8277793 |
T |
|
| Q |
217 |
gtatattgtcggtatcaactggttagtaatact-----tacctttctctaaatttgaccatctaaaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
8277792 |
gtatattgtcggtatcaactggttagtaatacttatactaactttctctaaatttgaccaactaaaaa |
8277725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 12315 - 12551
Alignment:
| Q |
17 |
catcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgagcaaagaaaaagactgattattgacatgaataacaat |
116 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||| |||| || |||||||||||| | |||||||| |||||||||||||||||| | || |
|
|
| T |
12315 |
catcatccttcatgatcttctaagagatcttggaatttaccaatgcactaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaac |
12414 |
T |
|
| Q |
117 |
aaaagtg------ggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttg |
210 |
Q |
| |
|
||| || | | | ||||||||| ||| || ||||||| ||||||| ||||| || ||| |||||||||||||||||||| |||||||| | |
|
|
| T |
12415 |
aaacatgaacggtgtttaggggagaagcatcaaagcctgatgacttgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcg |
12514 |
T |
|
| Q |
211 |
ctgcccgtatattgtcggtatcaactggttagtaata |
247 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12515 |
ctgcccgtatattgtcagtatcaactggttagtaata |
12551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University