View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_low_12 (Length: 281)
Name: NF3654_low_12
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 42212537 - 42212272
Alignment:
| Q |
5 |
ttattttgctcctatgtttcctactttctcatttccatgtcatcatttgcaacaataacacagacaaagatgttcttctatcattcaaattacaagtaac |
104 |
Q |
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| T |
42212537 |
ttattttgctcctatgtttcctactttctcatttccatgtcatcatttgcaacaataacacagacaaagatattcttctatcattcaaattacaagtaac |
42212438 |
T |
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| Q |
105 |
tgatccaaacaatgccttgtccagttggaaacaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctcta |
204 |
Q |
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| T |
42212437 |
tgatccaaacaatgccttgtccagttggaaacaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctcta |
42212338 |
T |
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| Q |
205 |
accttacggggacttggcctctcaggtaaactaccctctaacctctccaacctcacttaccttcat |
270 |
Q |
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| T |
42212337 |
accttacggggacttggcctctctggtaaactaccctctaacctctccaacctcacttaccttcat |
42212272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 42224723 - 42224488
Alignment:
| Q |
35 |
atttccatgtcatcatttgcaacaataacacagacaaagatgttcttctatcattcaaattacaagtaactgatccaaacaatgccttgtccagttggaa |
134 |
Q |
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|||| |||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42224723 |
attttcatggcatcatttgcagcaataacactgacaaagatattcttctatcattcaaattacaagtaactgatccaaacaatgctttgtccagttggaa |
42224624 |
T |
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| Q |
135 |
acaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggtaaa |
234 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
42224623 |
acaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttatcaggacttaaactctctggtaaa |
42224524 |
T |
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| Q |
235 |
ctaccctctaacctctccaacctcacttaccttcat |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
42224523 |
ctaccccctaacctctccaacctcacttaccttcat |
42224488 |
T |
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