View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_low_19 (Length: 233)
Name: NF3654_low_19
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_low_19 |
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| [»] scaffold0007 (3 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 36 - 225
Target Start/End: Complemental strand, 35056 - 34864
Alignment:
| Q |
36 |
ttagaatcaaaccatatacaagtcttagaaaagnnnnnnnnnggttcata----attatctttttaaagagctacctagtaatgggagtgctcttgagtt |
131 |
Q |
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| T |
35056 |
ttagaatcaaaccatatacaagtcttagaaaagaaaaaaaa-ggttcatatataaatatctttttaaagagctacctagtaatgggagtgctcttgagtt |
34958 |
T |
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| Q |
132 |
gacagaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcatct |
225 |
Q |
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| T |
34957 |
gacacaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtgggaaactcgagactctcacatcctgaataatcgaattcatct |
34864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 36 - 225
Target Start/End: Complemental strand, 40369 - 40177
Alignment:
| Q |
36 |
ttagaatcaaaccatatacaagtcttagaaaagnnnnnnnnnggttcata----attatctttttaaagagctacctagtaatgggagtgctcttgagtt |
131 |
Q |
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| T |
40369 |
ttagaatcaaaccatatacaagtcttagaaaagaaaaaaaa-ggttcatatataaatatctttttaaagagctacctagtaatgggagtgctcttgagtt |
40271 |
T |
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| Q |
132 |
gacagaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcatct |
225 |
Q |
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| T |
40270 |
gacacaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtgggaaactcgagactctcacatcctgaataatcgaattcatct |
40177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 70897 - 70715
Alignment:
| Q |
29 |
ataataattagaatcaaaccatatacaagtcttagaaaagnnnnnnnnn-ggttcata----attatctttttaaagagctacctagtaatgggagtgct |
123 |
Q |
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| T |
70897 |
ataataattagaatcaaaccatatacaagtcttagaaaagaaaaaaaaaaggttcatatataattatctttttaaagagctacctagtaatgggagtgct |
70798 |
T |
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| Q |
124 |
cttgagttgacagaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatcc |
206 |
Q |
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| T |
70797 |
cttgagttgacagaatgaaatggtataaactgcattaatctcttccatcagtcagaggtggtaaacttgacactctcacatcc |
70715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 28906287 - 28906101
Alignment:
| Q |
40 |
aatcaaaccatatacaagtcttagaaaagnnnnnnnnnggttcataattatctttttaaagagct-acctagtaatgggagtgctcttgagttgacagaa |
138 |
Q |
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|||||||||| |||||| ||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
28906287 |
aatcaaaccaaatacaaatcttagaaaagaaaaaaaaaggttcataattaccttttcaaagagcttacctagtaatgggagtggtcttgagttgacagaa |
28906188 |
T |
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| Q |
139 |
tgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcatct |
225 |
Q |
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|||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||| |
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| T |
28906187 |
tgaagcggagtaaactgcattaatatcttccatcagtcagaggtggaaaactcgagactctcacatcctgaatgatcgaattcatct |
28906101 |
T |
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