View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_low_2 (Length: 464)
Name: NF3654_low_2
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 45165438 - 45165875
Alignment:
| Q |
7 |
tagattatactttgacatattatgcttacatgttgtcaactaatagtaaaacctatatttacatttatactgaattttgtgattcagctatcagattttg |
106 |
Q |
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| T |
45165438 |
tagattatactttgacatattatgcttacatgttgtcaactaatagtaaaacctatatttacatttatactgaattttgtgattcagctatcagattttg |
45165537 |
T |
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| Q |
107 |
gacttgctgtagcatctggcgtgcaacacaagaacatgaagatgtcgggaactttaggatatgtggcacccgagtacatatcacatggtctatattatta |
206 |
Q |
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| T |
45165538 |
gacttgctgtagcatctggcgtgcaacacaagaacatgaagatgtcgggaactttaggatatgtggcacccgagtacatatcacatggtatatattatta |
45165637 |
T |
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| Q |
207 |
gtttttaaattatgattatgctaaataaatactgattaggtgcatgagattataattaagctttgactcggactatggaacttgatgttttgttcttttt |
306 |
Q |
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| T |
45165638 |
gtttttcaattatgattatgctaaataaatactgattaggtgcatgagattataattaagctttgactcggactatggaacttgatgttttgttcttttt |
45165737 |
T |
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| Q |
307 |
actcaacaaaatttaacaatggtaacttttttcaggtaaactaactgataagagcgatgtctatgctttcggagttgtccttctagaattacttactgga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45165738 |
actcaacaaaatttaacaatggtaacttttttcaggtaaactaactgataagagcgatgtctatgctttcggagttgtccttctagaattacttactgga |
45165837 |
T |
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| Q |
407 |
agaaaaccaatgcataatatgtcctcagatcaatatca |
444 |
Q |
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| T |
45165838 |
agaaaaccaatgcataatatgtcctcagatcaatatca |
45165875 |
T |
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