View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_low_20 (Length: 217)
Name: NF3654_low_20
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_low_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 42224108 - 42224322
Alignment:
| Q |
3 |
ttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagat |
102 |
Q |
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| T |
42224108 |
ttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagat |
42224207 |
T |
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| Q |
103 |
tgtggagattgcccaattcacttggaatttcaccctcaagcatgttcctttccatggaatgattcttgagagataagagattgctaaaggttgaagttat |
202 |
Q |
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| T |
42224208 |
tgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaaggaat |
42224307 |
T |
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| Q |
203 |
ttgacctgtgagatt |
217 |
Q |
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||||||||||||||| |
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| T |
42224308 |
ttgacctgtgagatt |
42224322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 42211892 - 42212106
Alignment:
| Q |
3 |
ttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211892 |
ttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagat |
42211991 |
T |
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| Q |
103 |
tgtggagattgcccaattcacttggaatttcaccctcaagcatgttcctttccatggaatgattcttgagagataagagattgctaaaggttgaagttat |
202 |
Q |
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| T |
42211992 |
tgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaaggaat |
42212091 |
T |
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| Q |
203 |
ttgacctgtgagatt |
217 |
Q |
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| T |
42212092 |
tttaccagtgagatt |
42212106 |
T |
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