View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3654_low_4 (Length: 371)
Name: NF3654_low_4
Description: NF3654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3654_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 69 - 353
Target Start/End: Complemental strand, 10595400 - 10595115
Alignment:
| Q |
69 |
caacattggtatatatctaatgcatatacatgaattgcagttaaatatcgttgctgctcaatgaccaaacacaaataaattatattaactaagacagatt |
168 |
Q |
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| T |
10595400 |
caacattggtatatatctaatgcatatacgtgaattgcagttaaatatcgttgctgctcaatgaccaaacacaaataaattatattaactaagacagatt |
10595301 |
T |
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| Q |
169 |
ttgacgaatttttgcacggattctctttactggttagtaataacagaaaaaccaagaaagatagaaaagagaaacaatcaacattaaaacaataaattct |
268 |
Q |
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| T |
10595300 |
ttgacgaatttttgcacggattctctttattggttagcaataacagaaaaaccaagaaagatagaaaagagaaacaatcaacattaaaacaataaattct |
10595201 |
T |
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| Q |
269 |
tcttggtcctatagatccaaatatcctatcatctttggcataaaaaactgcatt-ttttggttacaacaataaggcatgcatcaag |
353 |
Q |
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| T |
10595200 |
tcttggtcctatagatcctaatatcctatcatctttggcataaaaaactgcatttttttggttacaacaataaggcatacatcaag |
10595115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 10595442 - 10595402
Alignment:
| Q |
11 |
tccaagaatatgcaccattaataacaagattgatgtcaatt |
51 |
Q |
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| T |
10595442 |
tccaaaaaaatgcaccattaataacaagattgatgtcaatt |
10595402 |
T |
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