View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3655_high_1 (Length: 509)

Name: NF3655_high_1
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3655_high_1
NF3655_high_1
[»] chr6 (20 HSPs)
chr6 (159-498)||(235188-235526)
chr6 (159-492)||(17353758-17354091)
chr6 (243-461)||(28075665-28075889)
chr6 (203-434)||(27788722-27788952)
chr6 (159-434)||(20711754-20712019)
chr6 (280-496)||(34397776-34397997)
chr6 (243-406)||(19987043-19987207)
chr6 (292-434)||(19737726-19737867)
chr6 (316-434)||(13727433-13727550)
chr6 (316-434)||(21479449-21479566)
chr6 (316-434)||(33774072-33774189)
chr6 (316-434)||(21280500-21280617)
chr6 (348-434)||(24711033-24711118)
chr6 (348-417)||(30832573-30832643)
chr6 (369-416)||(1155899-1155946)
chr6 (364-417)||(21183724-21183777)
chr6 (369-406)||(27994778-27994815)
chr6 (364-416)||(2477634-2477686)
chr6 (364-400)||(20611794-20611830)
chr6 (317-357)||(30121706-30121746)
[»] chr8 (30 HSPs)
chr8 (159-461)||(42600583-42600885)
chr8 (160-498)||(10917194-10917530)
chr8 (204-489)||(23798233-23798524)
chr8 (299-498)||(23606593-23606797)
chr8 (292-498)||(45475745-45475956)
chr8 (292-417)||(41879109-41879235)
chr8 (292-417)||(13534735-13534861)
chr8 (292-417)||(13624275-13624401)
chr8 (316-417)||(30883281-30883383)
chr8 (316-434)||(5860778-5860895)
chr8 (316-417)||(2952270-2952372)
chr8 (316-434)||(3048551-3048668)
chr8 (364-434)||(7944556-7944624)
chr8 (366-417)||(34789911-34789962)
chr8 (364-417)||(5942697-5942750)
chr8 (317-357)||(25561640-25561680)
chr8 (319-357)||(8102845-8102883)
chr8 (364-417)||(8102913-8102966)
chr8 (364-417)||(11290185-11290238)
chr8 (317-357)||(8646129-8646169)
chr8 (317-357)||(15167547-15167587)
chr8 (363-434)||(37430192-37430261)
chr8 (364-416)||(39332455-39332507)
chr8 (317-357)||(41677307-41677347)
chr8 (364-434)||(15078759-15078827)
chr8 (317-354)||(11290113-11290150)
chr8 (364-417)||(15167464-15167517)
chr8 (365-402)||(38009203-38009240)
chr8 (317-357)||(7944656-7944696)
chr8 (317-357)||(15078689-15078729)
[»] chr1 (33 HSPs)
chr1 (160-461)||(13913479-13913782)
chr1 (165-461)||(19955537-19955831)
chr1 (160-492)||(40501758-40502090)
chr1 (203-434)||(1366911-1367141)
chr1 (280-461)||(27559564-27559751)
chr1 (159-434)||(9173056-9173322)
chr1 (280-461)||(17168883-17169070)
chr1 (292-498)||(23185366-23185577)
chr1 (285-406)||(44895584-44895706)
chr1 (292-417)||(4971666-4971792)
chr1 (316-434)||(9181038-9181155)
chr1 (299-434)||(5316626-5316760)
chr1 (292-434)||(51607472-51607613)
chr1 (292-417)||(50881369-50881495)
chr1 (316-417)||(44655704-44655806)
chr1 (332-498)||(5027528-5027701)
chr1 (316-403)||(27906779-27906867)
chr1 (348-434)||(14146295-14146380)
chr1 (348-434)||(3406413-3406498)
chr1 (348-434)||(3440322-3440407)
chr1 (348-434)||(6771786-6771871)
chr1 (348-417)||(41697185-41697255)
chr1 (358-417)||(16140061-16140120)
chr1 (364-417)||(33170771-33170824)
chr1 (364-417)||(43235818-43235871)
chr1 (317-357)||(39134856-39134896)
chr1 (373-434)||(21740970-21741029)
chr1 (367-417)||(38853537-38853587)
chr1 (364-397)||(26803960-26803993)
chr1 (364-417)||(39134771-39134824)
chr1 (364-405)||(45758506-45758547)
chr1 (373-402)||(52127521-52127550)
chr1 (369-417)||(5533329-5533377)
[»] chr3 (33 HSPs)
chr3 (160-434)||(53506918-53507183)
chr3 (18-159)||(50219113-50219254)
chr3 (280-492)||(34290605-34290823)
chr3 (160-498)||(50939197-50939534)
chr3 (203-498)||(44708318-44708619)
chr3 (207-434)||(54407192-54407417)
chr3 (280-434)||(43207272-43207424)
chr3 (243-498)||(37168248-37168510)
chr3 (280-434)||(9878721-9878874)
chr3 (280-406)||(48157058-48157185)
chr3 (292-417)||(8073387-8073512)
chr3 (292-434)||(3953930-3954071)
chr3 (316-434)||(54619237-54619354)
chr3 (316-461)||(27078569-27078720)
chr3 (316-461)||(27084366-27084517)
chr3 (316-434)||(38681127-38681244)
chr3 (309-406)||(18372427-18372525)
chr3 (348-434)||(21582758-21582843)
chr3 (316-434)||(36716059-36716176)
chr3 (316-433)||(29620423-29620539)
chr3 (348-434)||(47467671-47467756)
chr3 (348-498)||(53149277-53149433)
chr3 (362-434)||(42098803-42098873)
chr3 (317-357)||(29598040-29598080)
chr3 (317-357)||(49393023-49393063)
chr3 (317-357)||(52374590-52374630)
chr3 (367-406)||(49393097-49393136)
chr3 (369-434)||(36605974-36606036)
chr3 (158-200)||(48720555-48720597)
chr3 (366-434)||(28689395-28689461)
chr3 (364-417)||(54574876-54574929)
chr3 (317-357)||(8420258-8420298)
chr3 (317-357)||(42453344-42453384)
[»] chr7 (26 HSPs)
chr7 (160-461)||(20091280-20091579)
chr7 (243-461)||(23551069-23551294)
chr7 (203-461)||(48983843-48984107)
chr7 (160-461)||(47984968-47985268)
chr7 (243-498)||(10329372-10329632)
chr7 (243-434)||(24525718-24525907)
chr7 (280-493)||(19692010-19692229)
chr7 (203-434)||(38414909-38415138)
chr7 (302-406)||(25010371-25010476)
chr7 (280-434)||(8239601-8239756)
chr7 (299-434)||(8171572-8171706)
chr7 (316-434)||(18776799-18776916)
chr7 (328-417)||(29077184-29077274)
chr7 (348-434)||(10955468-10955553)
chr7 (348-434)||(12596320-12596405)
chr7 (369-417)||(9021848-9021896)
chr7 (317-357)||(7398380-7398420)
chr7 (317-357)||(17800354-17800394)
chr7 (364-417)||(36891579-36891632)
chr7 (317-357)||(23859002-23859042)
chr7 (369-417)||(23859079-23859127)
chr7 (375-417)||(6765729-6765771)
chr7 (364-402)||(9014825-9014863)
chr7 (369-417)||(17800269-17800317)
chr7 (317-357)||(26917815-26917855)
chr7 (317-357)||(27237556-27237596)
[»] chr4 (39 HSPs)
chr4 (163-434)||(40089328-40089590)
chr4 (280-498)||(34027500-34027723)
chr4 (160-406)||(38352314-38352554)
chr4 (280-492)||(32128505-32128723)
chr4 (243-434)||(19498389-19498576)
chr4 (203-406)||(24969278-24969485)
chr4 (243-492)||(37777191-37777447)
chr4 (280-434)||(43455564-43455717)
chr4 (280-461)||(54083241-54083428)
chr4 (280-434)||(16844942-16845095)
chr4 (280-434)||(2790774-2790927)
chr4 (280-434)||(16882428-16882581)
chr4 (292-434)||(47128920-47129061)
chr4 (292-417)||(35465040-35465166)
chr4 (292-417)||(35779373-35779499)
chr4 (299-434)||(34768607-34768741)
chr4 (292-417)||(10978833-10978959)
chr4 (292-417)||(23509846-23509972)
chr4 (292-434)||(48209173-48209314)
chr4 (292-417)||(13460140-13460266)
chr4 (316-434)||(38209624-38209741)
chr4 (292-394)||(10428276-10428379)
chr4 (316-403)||(55255226-55255314)
chr4 (358-498)||(54780777-54780923)
chr4 (348-434)||(5128875-5128960)
chr4 (348-417)||(1105521-1105591)
chr4 (348-434)||(32915374-32915459)
chr4 (348-434)||(37514648-37514733)
chr4 (364-434)||(4167924-4167992)
chr4 (316-357)||(36118590-36118631)
chr4 (317-357)||(2135451-2135491)
chr4 (317-357)||(37746854-37746894)
chr4 (317-357)||(39329525-39329565)
chr4 (431-461)||(24969505-24969535)
chr4 (317-357)||(15735030-15735070)
chr4 (364-416)||(27112036-27112088)
chr4 (317-357)||(30507205-30507245)
chr4 (317-357)||(36178607-36178647)
chr4 (317-357)||(40217164-40217204)
[»] chr5 (32 HSPs)
chr5 (203-498)||(16198754-16199056)
chr5 (160-498)||(27923885-27924222)
chr5 (203-498)||(9364130-9364431)
chr5 (160-461)||(7670728-7671028)
chr5 (280-434)||(38869394-38869547)
chr5 (284-434)||(28822373-28822522)
chr5 (160-459)||(40389535-40389831)
chr5 (280-434)||(16799358-16799510)
chr5 (295-417)||(16592120-16592243)
chr5 (292-498)||(27078939-27079152)
chr5 (292-434)||(30854258-30854398)
chr5 (316-434)||(34756397-34756514)
chr5 (348-434)||(36187910-36187995)
chr5 (292-417)||(22986604-22986719)
chr5 (348-434)||(19523183-19523268)
chr5 (348-417)||(2274874-2274944)
chr5 (348-417)||(15480135-15480205)
chr5 (361-417)||(23284108-23284164)
chr5 (369-498)||(31194573-31194705)
chr5 (364-405)||(40794385-40794426)
chr5 (317-357)||(11242449-11242489)
chr5 (317-357)||(15639575-15639615)
chr5 (317-357)||(34425832-34425872)
chr5 (369-417)||(36868922-36868970)
chr5 (364-417)||(2530943-2530996)
chr5 (372-417)||(10543682-10543727)
chr5 (364-417)||(33037781-33037834)
chr5 (317-357)||(2024771-2024811)
chr5 (317-357)||(7079561-7079601)
chr5 (369-417)||(26718995-26719043)
chr5 (369-417)||(26988739-26988787)
chr5 (317-357)||(40794456-40794496)
[»] chr2 (28 HSPs)
chr2 (160-498)||(27506704-27507041)
chr2 (280-434)||(10762599-10762752)
chr2 (203-434)||(9045868-9046097)
chr2 (160-492)||(26715931-26716262)
chr2 (159-434)||(24410235-24410505)
chr2 (292-417)||(29939911-29940037)
chr2 (203-367)||(8327503-8327669)
chr2 (316-434)||(3155168-3155285)
chr2 (316-434)||(4505845-4505962)
chr2 (326-417)||(6964968-6965060)
chr2 (316-417)||(8907128-8907230)
chr2 (316-416)||(12337498-12337599)
chr2 (348-434)||(3952989-3953074)
chr2 (348-434)||(7162767-7162852)
chr2 (364-434)||(16097008-16097076)
chr2 (364-417)||(37182670-37182723)
chr2 (317-357)||(10252335-10252375)
chr2 (317-357)||(24035679-24035719)
chr2 (317-357)||(29694312-29694352)
chr2 (431-498)||(8327690-8327756)
chr2 (370-417)||(22727551-22727598)
chr2 (372-417)||(12134089-12134134)
chr2 (364-417)||(28425759-28425812)
chr2 (317-357)||(11912892-11912932)
chr2 (317-357)||(12134174-12134214)
chr2 (317-357)||(37182598-37182638)
chr2 (317-357)||(38400726-38400766)
chr2 (364-416)||(38400798-38400850)
[»] scaffold0039 (2 HSPs)
scaffold0039 (285-498)||(106459-106678)
scaffold0039 (160-200)||(106379-106420)
[»] scaffold0070 (1 HSPs)
scaffold0070 (292-417)||(1271-1397)
[»] scaffold0001 (1 HSPs)
scaffold0001 (348-413)||(181903-181969)
[»] scaffold0012 (1 HSPs)
scaffold0012 (364-417)||(206538-206591)
[»] scaffold1590 (1 HSPs)
scaffold1590 (370-417)||(307-354)
[»] scaffold0227 (1 HSPs)
scaffold0227 (364-417)||(16028-16081)
[»] scaffold0022 (2 HSPs)
scaffold0022 (317-357)||(40012-40052)
scaffold0022 (317-357)||(138072-138112)
[»] scaffold0007 (2 HSPs)
scaffold0007 (317-357)||(230993-231033)
scaffold0007 (369-417)||(230908-230956)
[»] scaffold1320 (2 HSPs)
scaffold1320 (364-434)||(1355-1423)
scaffold1320 (317-357)||(1285-1325)
[»] scaffold0018 (2 HSPs)
scaffold0018 (364-417)||(173559-173612)
scaffold0018 (317-357)||(173644-173684)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 159 - 498
Target Start/End: Complemental strand, 235526 - 235188
Alignment:
Q  159 tcaggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagta 256  Q
    |||||||||||||||||||| ||||||||||| ||||||||||        |||||||||||||||||||||| ||          ||||||||||||||    
T  235526 tcaggcccgtccctgagggggtgcaaacagcttaacagagctg--------ggcctccctcagtcatggaccttaattttttttttaatacccactagta 235435  T
Q  257 ctactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgt 356  Q
    |||||||||||||||        ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  235434 ctactgccctccaaattttttttaataccctcaaccattttctgtccc-ttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgt 235336  T
Q  357 tggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaataga 449  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||       |||||||||||||||||||    
T  235335 tggtgggggtttctcatgtatacggtagtcattttcatctttgggtgtacggtatatatacccggcaccttatatttatcttttaaaaaatataaataga 235236  T
Q  450 tcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    ||||||||||||         ||||||||||||||||||||||||||||    
T  235235 tcattgctttttaaaaaaaa-atacgttttgattttatcactggtctct 235188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 492
Target Start/End: Original strand, 17353758 - 17354091
Alignment:
Q  159 tcaggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtac 257  Q
    ||||||||| |||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||         |||||||||||||||    
T  17353758 tcaggcccggccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtac 17353849  T
Q  258 tactgccctccaaaannnnnnn-aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgt 356  Q
    |||||||||| ||          |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17353850 tactgccctctaattttttttttaatacccccagccattttctgtccccttgttttagccttttaggtctattagaattaggtcctcttgcttttggtgt 17353949  T
Q  357 t-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatag 448  Q
    | ||||||||||  ||||||||||| ||||||||||||| ||||||||||| |||||||||  || |||||||||       ||||||||||||||||||    
T  17353950 taggtgggggttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatag 17354047  T
Q  449 atcattgctttttnnnnnnnntatacgttttgattttatcactg 492  Q
    | |||||||||||         ||||||||||||||||||||||    
T  17354048 aacattgctttttttaaaaaaaatacgttttgattttatcactg 17354091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 243 - 461
Target Start/End: Original strand, 28075665 - 28075889
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcct 342  Q
    |||||||||||||||||||| |||||||         |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  28075665 aatacccactagtactactgtcctccaatttttttttaatacccccagccattttctgtctccttgttttagccttttatgcctattagaattaggtcct 28075764  T
Q  343 cttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------ttta 434  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||       ||||    
T  28075765 cttgtttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatata--cggcaccttatatttatctttta 28075862  T
Q  435 aaaaatataaatagatcattgcttttt 461  Q
    ||||||||||||||| |||||||||||    
T  28075863 aaaaatataaatagaacattgcttttt 28075889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 203 - 434
Target Start/End: Complemental strand, 27788952 - 27788722
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgt 301  Q
    |||||||||||||||||||||||| ||||||          |||||||||||||| |||||||||||||         ||||||||||||||||||||||    
T  27788952 gagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactagtattactgccctccaat-tttttttaatacccccaaccattttctgt 27788854  T
Q  302 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgg 400  Q
    |||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  27788853 ccccttattttagtcttttaggcctattaaaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgg 27788754  T
Q  401 gtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| |||||||||  ||||||||||||||||    
T  27788753 gtgtaccgcatatata--cggcaccttatattta 27788722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 159 - 434
Target Start/End: Complemental strand, 20712019 - 20711754
Alignment:
Q  159 tcaggcccgtccctgagg-ggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagta 256  Q
    ||||||||| |||||||| ||||||||||||||||||||||||        |||||||||||||||||| ||||||          ||||||||||||||    
T  20712019 tcaggcccggccctgaggaggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaattttttttttaatacccactagta 20711928  T
Q  257 ctactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgt 356  Q
     ||||| |||||||         |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||  |||    
T  20711927 ttactgtcctccaa---ttttttaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggtcatcttgcttttaatgt 20711831  T
Q  357 t-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    | | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  20711830 tagatgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatattta 20711754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 280 - 496
Target Start/End: Original strand, 34397776 - 34397997
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| |||| ||||||| ||    
T  34397776 aatacccccaaccattttctgtcctcttgttttagccttttaggcctattagaattaggtcttcttgcttttggtgttaagtggaggttcctcatgttta 34397875  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnnta 471  Q
    || |||||||||| |||||| ||||||| |||||||||  || |||||| ||       ||||||||||||||||||| ||||||| |||         |    
T  34397876 cgatagtcatttttacctttaggtgtaccgcatatata--cgtcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa-a 34397972  T
Q  472 tacgttttgattttatcactggtct 496  Q
    |||||||||||||||||||||||||    
T  34397973 tacgttttgattttatcactggtct 34397997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 243 - 406
Target Start/End: Original strand, 19987043 - 19987207
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcct 342  Q
    |||||||||||||||||||||||| |||         |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  19987043 aatacccactagtactactgcccttcaatttttttttaatacccccagccattttccgtccccttgttttagccttttaggcctattagaattaggtcat 19987142  T
Q  343 cttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtac 406  Q
    ||||||||||||||| ||||||| || || ||||||| ||||  ||||||||| |||||||||||    
T  19987143 cttgcttttggtgttaggtggggattccttatgtatatggtaaccattttcacatttgggtgtac 19987207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 292 - 434
Target Start/End: Complemental strand, 19737867 - 19737726
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  ||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  19737867 cattttctgtcctcttgttttagccttttaggattattaaaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattt 19737768  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| | ||||||| |||||||||  ||||||||| ||||||    
T  19737767 tcacctctaggtgtaccgcatatata--cggcaccttgtattta 19737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 13727550 - 13727433
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  13727550 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatata 13727451  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  13727450 ta--cggcaccttgtattta 13727433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 21479449 - 21479566
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  21479449 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatata 21479548  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  21479549 ta--cggcaccttgtattta 21479566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 33774072 - 33774189
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  33774072 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatata 33774171  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  33774172 ta--cggcaccttgtattta 33774189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 21280500 - 21280617
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  21280500 cttttaggattattagaattagttcctcttgattttggtgttaggtgggagttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatata 21280599  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  21280600 ta--cggcaccttgtattta 21280617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 24711118 - 24711033
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||  ||||||||  ||||||||| ||||||    
T  24711118 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatata--cggcaccttgtattta 24711033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 30832643 - 30832573
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||| || |||||||||  |||||||||    
T  30832643 ttttggtgttaggtgggggttcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatac 30832573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 1155946 - 1155899
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatata 416  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  1155946 ctcatgtatacggtagtcattttcacctctggatgtaccgcatatata 1155899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 21183777 - 21183724
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||  |||||||||    
T  21183777 ggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatac 21183724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 27994778 - 27994815
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtac 406  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  27994778 ctcatgtatacggtagtgattttcacctttgagtgtac 27994815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 2477686 - 2477634
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatata 416  Q
    |||| ||||||||||||||||| |||||||| ||| ||||||  |||||||||    
T  2477686 ggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatata 2477634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 20611794 - 20611830
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgg 400  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  20611794 ggttcctcatgtatacggtagtgattttcacctttgg 20611830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 30121706 - 30121746
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||| ||||||||||  |||||||||||||||||||||    
T  30121706 ttttaggtctattagaatcgggtcctcttgcttttggtgtt 30121746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 159 - 461
Target Start/End: Original strand, 42600583 - 42600885
Alignment:
Q  159 tcaggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagta 256  Q
    |||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||          ||||||||||||||    
T  42600583 tcaggcccgtccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaattttatttttaatacccactagta 42600674  T
Q  257 ctactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgt 356  Q
    ||||||||||||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42600675 ctactgccctccaaaaaaaatttaataaccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcttcttgcttttggtgt 42600774  T
Q  357 t-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatag 448  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||       ||||||||||||||||||    
T  42600775 taggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatata--cggcaccttatatttatcttttaaaaaatataaatag 42600872  T
Q  449 atcattgcttttt 461  Q
    |||||||||||||    
T  42600873 atcattgcttttt 42600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 160 - 498
Target Start/End: Original strand, 10917194 - 10917530
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    ||||||||||| ||||||| ||||||||||||||||||||||        ||||||||||| |||||| || |||         ||||||||||||||||    
T  10917194 caggcccgtccttgagggggtgcaaacagctcaacagagctg--------ggcctccctcactcatgggccacaatttttttttaatacccactagtact 10917285  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    ||||| || |||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  10917286 actgctcttcaaaaaaaatttaatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcatcttgcttttggtgtta 10917385  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagat 450  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||  ||||||||||||       ||||||||||||||||||||    
T  10917386 ggtgggggttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagat 10917483  T
Q  451 cattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    ||||| |||||         ||||||||||||||||||||||| ||||    
T  10917484 cattg-ttttttttaaaaaaatacgttttgattttatcactggcctct 10917530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 204 - 489
Target Start/End: Complemental strand, 23798524 - 23798233
Alignment:
Q  204 agctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtc 302  Q
    ||||||||||||||||||||||| ||||||          |||||||||||||| |||||||||||||         |||||||||||||||||||||||    
T  23798524 agctgggcctccctcagtcatgggcctcaaatttttttttaatacccactagtattactgccctccaat-tgtttttaatacccccaaccattttctgtc 23798426  T
Q  303 cccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttggg 401  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  23798425 cccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttttggg 23798326  T
Q  402 tgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatca 489  Q
    ||||| |||||||||  ||||||||||||       ||||||||||||||||||| ||||||| |||        ||||||||||||||||||||    
T  23798325 tgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagaacattgctctttaaaaaaaatatacgttttgattttatca 23798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 299 - 498
Target Start/End: Complemental strand, 23606797 - 23606593
Alignment:
Q  299 tgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctt 397  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  23606797 tgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctt 23606698  T
Q  398 tgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcac 490  Q
    ||||||||| |||||||||  ||||||||||||       ||||||||||||||||||| ||||||| |||         ||||||||||||||||||||    
T  23606697 tgggtgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa-atacgttttgattttatcac 23606601  T
Q  491 tggtctct 498  Q
    ||||||||    
T  23606600 tggtctct 23606593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 292 - 498
Target Start/End: Original strand, 45475745 - 45475956
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  45475745 cattttctgtcctcttgttttagccttttaggcctattagaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattt 45475844  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgatt 483  Q
    |||||| ||||||||| |||||||||  ||||||||| ||       ||||||||||||||||||| ||||||| |||         |||||||||||||    
T  45475845 tcacctatgggtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa-atacgttttgatt 45475941  T
Q  484 ttatcactggtctct 498  Q
    |||||||||| ||||    
T  45475942 ttatcactggcctct 45475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 41879109 - 41879235
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  41879109 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggtttctcatgtattcggtagtcattt 41879208  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||||||| ||||| ||||||||||    
T  41879209 tcacctttggatgtaccgcatatatac 41879235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 13534861 - 13534735
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| | |||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  13534861 cattttctgtcctcttgttttagccttttaggattattagaattagtttctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattt 13534762  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||| ||||||||| ||||||||||    
T  13534761 tcacctctgggtgtaccgcatatatac 13534735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 13624401 - 13624275
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| | |||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  13624401 cattttctgtcctcttgttttagccttttaggattattagaattagtttctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattt 13624302  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||| ||||||||| ||||||||||    
T  13624301 tcacctctgggtgtaccgcatatatac 13624275  T

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Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 30883281 - 30883383
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  30883281 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatata 30883380  T
Q  415 tac 417  Q
    |||    
T  30883381 tac 30883383  T

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Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 5860895 - 5860778
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  5860895 cttttaggattattagaattagttcctcttgattttggtgttaggttggggtttctcatgtatatggtagtcattttcacctctgggtgtaccgcatata 5860796  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  5860795 ta--cggcaccttgtattta 5860778  T

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Target: chr8; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 2952372 - 2952270
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||| |||||||    
T  2952372 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatata 2952273  T
Q  415 tac 417  Q
    |||    
T  2952272 tac 2952270  T

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Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 3048668 - 3048551
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||| ||||| ||| ||||||||||||||||||||| || | ||||||| |||||||    
T  3048668 cttttaggattattagaattagttcctcttgattttggtgttaggtgagggttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatata 3048569  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  3048568 ta--cggcaccttgtattta 3048551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 7944624 - 7944556
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| ||||||||||||||||| ||||||||||||||||||||  ||||||||  ||||||||| ||||||    
T  7944624 ggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatata--cggcaccttgtattta 7944556  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 34789962 - 34789911
Alignment:
Q  366 tttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  34789962 tttctcatgtatacggtagtgattttcacctttgggtgtacaacatatatac 34789911  T

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Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 5942697 - 5942750
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  5942697 ggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatac 5942750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 25561680 - 25561640
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  25561680 ttttaggcctattagaattgggtcctcttgcttttggtgtt 25561640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 8102845 - 8102883
Alignment:
Q  319 ttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8102845 ttaggcctattagaattgggtcctcttgcttttggtgtt 8102883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 8102913 - 8102966
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||| | |||||||||||| ||||||| ||||||||||    
T  8102913 ggttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatac 8102966  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 11290185 - 11290238
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||  |||||||||    
T  11290185 ggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatac 11290238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 8646129 - 8646169
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  8646129 ttttaggcctattcgaattaggtcatcttgcttttggtgtt 8646169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 15167587 - 15167547
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  15167587 ttttaggcctattagaattgggtcctcttacttttggtgtt 15167547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 37430261 - 37430192
Alignment:
Q  363 gggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||| ||||||||||||||||||||||| |||| | ||||||  |||||||||  ||||||||| ||||||    
T  37430261 gggttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatata--cggcaccttgtattta 37430192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 39332507 - 39332455
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatata 416  Q
    |||| ||||||||||||||||| |||||||||||||| ||||| || ||||||    
T  39332507 ggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatata 39332455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 41677347 - 41677307
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  41677347 ttttaggcctattagaatcgggtcctcttgcttttggtgtt 41677307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 15078759 - 15078827
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| |||||||||||| |||| |||||||| ||||||||||  |||||||||  | ||||||||||||||    
T  15078759 ggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatata--cagcaccttatattta 15078827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 11290113 - 11290150
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggt 354  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  11290113 ttttaggcctattagaattgggtcctgttgcttttggt 11290150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 15167517 - 15167464
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| |||||||||||| |||| |||||||| ||||||||||  ||||||||||    
T  15167517 ggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatac 15167464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 38009240 - 38009203
Alignment:
Q  365 gtttctcatgtatacggtagtcattttcacctttgggt 402  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  38009240 gtttctcatgtatatggtagtaattttcacctttgggt 38009203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 7944696 - 7944656
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||| ||||  ||||||||||||||||||||    
T  7944696 ttttaggcctattaaaattgtgtcctcttgcttttggtgtt 7944656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 15078689 - 15078729
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||| |||||||| ||||||||| |||||||||||    
T  15078689 ttttaggcctgttagaattgggtcctcttacttttggtgtt 15078729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 160 - 461
Target Start/End: Complemental strand, 13913782 - 13913479
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    ||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||         ||||||||||||||||    
T  13913782 caggcccgtccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtact 13913691  T
Q  259 actgccctccaaaannnnnnn-aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||| |||          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13913690 actgcccttcaattttttttttaatacccccaaccattttctgtcccattgttttagccttttaggcctattagaattaggtcatcttgcttttggtgtt 13913591  T
Q  358 -ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaataga 449  Q
     ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||       |||||||||||||||||||    
T  13913590 aggtgggggtttctcatgtatacggtagtcattttcacttttaggtgtaccgcatatatacccggcaacttatatttatcttttaaaaaatataaataga 13913491  T
Q  450 tcattgcttttt 461  Q
    ||||||||||||    
T  13913490 tcattgcttttt 13913479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 165 - 461
Target Start/End: Original strand, 19955537 - 19955831
Alignment:
Q  165 ccgtccctgaggggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgcc 264  Q
    |||||| |||||||||||||||||||||||||||||        | |||||||||||||||| ||||||         |||||||||||||||| |||||    
T  19955537 ccgtccttgaggggtgcaaacagctcaacagagctg--------gacctccctcagtcatgggcctcaatttttttttaatacccactagtactgctgcc 19955628  T
Q  265 ctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtggg 363  Q
    ||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19955629 ctccaaaaaaaaaattatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtggg 19955728  T
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgc 456  Q
    |||| ||||| |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||       ||||||||||||||||||||||||||    
T  19955729 ggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatata--cggtaccttatatttatcttttaaaaaatataaatagatcattgc 19955826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 160 - 492
Target Start/End: Complemental strand, 40502090 - 40501758
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtac 257  Q
    ||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||          |||||||||||||||    
T  40502090 caggcccgtccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaattttttttttaatacccactagtac 40501999  T
Q  258 tactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||| |||        |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  40501998 tactgccctctaaattttttttaatacccccagccattttctgtccccttgttttagccttttaggtctattagaattagatcatcttgcttttggtgtt 40501899  T
Q  358 -ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaataga 449  Q
     ||||| ||||  |||||||||||||||||||||| |||||||||||||| |||||||||  || |||||||||       |||||||||||||||||||    
T  40501898 aggtggaggttcttcatgtatacggtagtcatttttacctttgggtgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaataga 40501801  T
Q  450 tcattgctttttnnnnnnnntatacgttttgattttatcactg 492  Q
    ||||| ||||||         ||||||||||||||||||||||    
T  40501800 tcattactttttttttaaaaaatacgttttgattttatcactg 40501758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 203 - 434
Target Start/End: Complemental strand, 1367141 - 1366911
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgt 301  Q
    |||||||||||||||||||||||| ||||||          |||||||||||||| |||||||||||||||       |||||||||| |||||||||||    
T  1367141 gagctgggcctccctcagtcatgggcctcaaaaaaaattttaatacccactagtattactgccctccaaaatttttt-aatacccccagccattttctgt 1367043  T
Q  302 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgg 400  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||    
T  1367042 ccccttgttttagtcttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggttcctcgtgtatacggtagtcattttcatctttgg 1366943  T
Q  401 gtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| |||||||||  ||||||||||||||||    
T  1366942 gtgtaccgcatatata--cggcaccttatattta 1366911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 27559564 - 27559751
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||    
T  27559564 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttacttatggtgttaggtgggggttcctcatgtata 27559663  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
    |||||||||||||||||||||||||||| |||||||||  || |||||||||       ||||||||||||||||||| |||||||||||    
T  27559664 cggtagtcattttcacctttgggtgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatagaacattgcttttt 27559751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 159 - 434
Target Start/End: Complemental strand, 9173322 - 9173056
Alignment:
Q  159 tcaggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtac 257  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||        |||||||||||||||||| ||||||         ||||||||||||||     
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagagttg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtat 9173231  T
Q  258 tactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    || ||||||||||         |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  9173230 tattgccctccaat-tttttttaatatccccagccattttctgtccccttgttttagtcttttaggcctattagaattaggtcctcttacttttggtgtt 9173132  T
Q  358 -ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
     |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||  ||||||||||||||||    
T  9173131 aggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatata--cggcaccttatattta 9173056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 17168883 - 17169070
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||    
T  17168883 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcttcttgcttttggtgttaggtaggggttcctcatgtata 17168982  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
     ||||||||||||||||||||||||||| |||||||||  |  |||||||||       ||||||||||||||||||| |||||||||||    
T  17168983 tggtagtcattttcacctttgggtgtaccgcatatata--caacaccttatatttatcttttaaaaaatataaatagaacattgcttttt 17169070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 292 - 498
Target Start/End: Original strand, 23185366 - 23185577
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  23185366 cattttctgtcctcttgttttagccttttaggcctattagaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattt 23185465  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgatt 483  Q
    |||||| ||||||||| |||||||||  ||||||||| ||       ||||||||||||||||||| ||||||| |||         |||||||||||||    
T  23185466 tcacctatgggtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa-atacgttttgatt 23185562  T
Q  484 ttatcactggtctct 498  Q
    |||||||||| ||||    
T  23185563 ttatcactggcctct 23185577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 44895584 - 44895706
Alignment:
Q  285 ccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggta 383  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  44895584 ccccagccattttctgtccctttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggta 44895683  T
Q  384 gtcattttcacctttgggtgtac 406  Q
     ||||||||||||||||||||||    
T  44895684 atcattttcacctttgggtgtac 44895706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 4971792 - 4971666
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  4971792 cattttttgtcctcttgttttagccttttaggcctattagaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattt 4971693  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||| | ||||||||| ||||||||||    
T  4971692 tcacttatgggtgtaccgcatatatac 4971666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 9181155 - 9181038
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||    
T  9181155 cttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatata 9181056  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||||||||||    
T  9181055 ta--cggcaccttatattta 9181038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 434
Target Start/End: Original strand, 5316626 - 5316760
Alignment:
Q  299 tgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctt 397  Q
    ||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||     
T  5316626 tgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctc 5316725  T
Q  398 tgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||| |||||||||  ||||||||| ||||||    
T  5316726 tgggtgtaccgcatatata--cggcaccttgtattta 5316760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 292 - 434
Target Start/End: Complemental strand, 51607613 - 51607472
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttgg-tgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| || | |||| ||| ||||||||||||||||||||||    
T  51607613 cattttctgttccctt-ttttagccttttaggcctattagaattatgtcctcttgcttttggtattagatgggagttcctcatgtatacggtagtcattt 51607515  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| ||||||||||| ||||||||| | | |||||||||||||    
T  51607514 tcacgtttgggtgtaccgcatatata-cggccaccttatattta 51607472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 50881369 - 50881495
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| |||||||  |||||||||| ||||| |||| ||||||||||| ||||||||||    
T  50881369 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttaattttggtgttaggtggaggttcctcatgtatactgtagtcattt 50881468  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||| | | ||||| ||||||||||    
T  50881469 tcacctctagatgtaccgcatatatac 50881495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 44655704 - 44655806
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  44655704 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatata 44655803  T
Q  415 tac 417  Q
    |||    
T  44655804 tac 44655806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 332 - 498
Target Start/End: Original strand, 5027528 - 5027701
Alignment:
Q  332 aattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata 430  Q
    |||||| ||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||||||| |||||||||  ||||||||| ||    
T  5027528 aattagttcctcttgcttttggtgttaggtgggggttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatata--cggcaccttgta 5027625  T
Q  431 -------tttaaaaaatataaatagatcattgct-ttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
           ||||||||||||||||||| ||||||| ||||         ||||||||||||||||||||||| ||||    
T  5027626 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctct 5027701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 27906867 - 27906779
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtg 403  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  27906867 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtg 27906779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 14146295 - 14146380
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||| |||||||||  ||||||||| ||||||    
T  14146295 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatata--cggcaccttgtattta 14146380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 3406413 - 3406498
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||  | |||||| |||||||||  ||||||||| ||||||    
T  3406413 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatata--cggcaccttgtattta 3406498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 3440407 - 3440322
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||  | |||||| |||||||||  ||||||||| ||||||    
T  3440407 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatata--cggcaccttgtattta 3440322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 6771786 - 6771871
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| ||||| |||| ||| |||||||||||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||    
T  6771786 ttttggtgttaggtggaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatata--cggcaccttgtattta 6771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 41697255 - 41697185
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  41697255 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatac 41697185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 16140061 - 16140120
Alignment:
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||| || |||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  16140061 ggtggggattcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatac 16140120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 33170771 - 33170824
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||||||||||| ||||||||| || ||||||| ||||||||||    
T  33170771 ggtttctcatgtatacggtagtgattttcaccatttggtgtaccgcatatatac 33170824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 43235871 - 43235818
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| |||||||||||| |||| ||||||||||||||||||||  |||||||||    
T  43235871 ggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatac 43235818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 39134896 - 39134856
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  39134896 ttttaagcctattagaattgggtcctcttgcttttggtgtt 39134856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 21741029 - 21740970
Alignment:
Q  373 tgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| ||||||||||||||||| ||||||||  |||||||||  ||||||||| ||||||    
T  21741029 tgtatatggtagtcattttcacctctgggtgtatcgcatatata--cggcaccttgtattta 21740970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 38853537 - 38853587
Alignment:
Q  367 ttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||||||||||||| |||||||||||||| | |||  |||||||||    
T  38853537 ttctcatgtatacggtagtgattttcacctttggatatacaacatatatac 38853587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 26803960 - 26803993
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctt 397  Q
    |||||||||||||||||||||| |||||||||||    
T  26803960 ggtttctcatgtatacggtagtgattttcacctt 26803993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 39134824 - 39134771
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||  ||||||||||    
T  39134824 ggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatac 39134771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 45758506 - 45758547
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgta 405  Q
    |||| ||||||||||||||||| |||||||||||||| ||||    
T  45758506 ggttcctcatgtatacggtagtgattttcacctttggatgta 45758547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 402
Target Start/End: Complemental strand, 52127550 - 52127521
Alignment:
Q  373 tgtatacggtagtcattttcacctttgggt 402  Q
    ||||||||||||||||||||||||||||||    
T  52127550 tgtatacggtagtcattttcacctttgggt 52127521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 5533329 - 5533377
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||||||||||| |||||||||||||  |||||  |||||||||    
T  5533329 ctcatgtatacggtagtgattttcacctttgattgtacatcatatatac 5533377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 160 - 434
Target Start/End: Complemental strand, 53507183 - 53506918
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    |||||||| |||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||         ||||||||||||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtact 53507092  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    ||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53507091 actgccctccaat-tttttttaatacccccaaccattttatgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtta 53506993  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||    
T  53506992 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--cggtaccttatattta 53506918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 50219113 - 50219254
Alignment:
Q  18 gatttgatgatttattgtgaatttgtatgaaaactttggcagagttggattgctttaagtatgattggtatcagttcattaagcatgaaggattactaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  50219113 gatttgatgatttattgtgaatttgtatgaaaactttggcagagttggattgctttaagtatgattggcatcagttcattaagcatgaagcactactaga 50219212  T
Q  118 cacgacattactaacagaaaacgacatgttggaactagtgtt 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  50219213 cacgacattactaacagaacacgacatgttggaactagtgtt 50219254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 280 - 492
Target Start/End: Complemental strand, 34290823 - 34290605
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||    
T  34290823 aatacccccaaccattttatgtccccttgttttagccttttaggcctattagaattaggtcctcttgtttttggtgttaggtgggggttcctcatatata 34290724  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnnta 471  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||||       ||||||||||||||||||| ||||| |||||         |    
T  34290723 cggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagaacattgtttttttaaaaaaaaa 34290626  T
Q  472 tacgttttgattttatcactg 492  Q
    |||||||||||||||||||||    
T  34290625 tacgttttgattttatcactg 34290605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 160 - 498
Target Start/End: Complemental strand, 50939534 - 50939197
Alignment:
Q  160 caggcccgtccctgagg-ggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    ||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||| ||||||         ||||||||| ||||||    
T  50939534 caggcccgtccctgaggaggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccaccagtact 50939443  T
Q  259 actgccctccaaaannnnnnn-aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||          |||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  50939442 actgccctccaattttttttttaataaccccagccattttctgtctccttgttttagtcttttaggcctattagaattaggtccttttgcttttggtgtt 50939343  T
Q  358 -ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaataga 449  Q
     || ||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||  ||||||||||||       |||||||||||||||||||    
T  50939342 aggcgggggttcctcatgtatacggtagtcatttttacctttgggtgtac--catatatatacggcaccttatatttatcttttaaaaaatataaataga 50939245  T
Q  450 tcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    ||||||||||||         ||||||||||||||||||||||| ||||    
T  50939244 tcattgctttttttaaaaaa-atacgttttgattttatcactggcctct 50939197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 203 - 498
Target Start/End: Original strand, 44708318 - 44708619
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgt 301  Q
    |||||||||||||||||||||||| ||||||          |||| |||||||||||||||| ||||||         |||||||||| ||||||| |||    
T  44708318 gagctgggcctccctcagtcatgggcctcaattttttttttaatatccactagtactactgctctccaatttttttttaatacccccagccattttatgt 44708417  T
Q  302 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgg 400  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  44708418 ccccttgttttagccttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgg 44708517  T
Q  401 gtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactgg 493  Q
    |||||| | |||||||  ||||||||||||       ||||||||||||||||||| |||| ||||||         |||||||||||||||||||||||    
T  44708518 gtgtaccggatatata--cggcaccttatatttatcttttaaaaaatataaatagaacatttctttttttaaaaaa-atacgttttgattttatcactgg 44708614  T
Q  494 tctct 498  Q
     ||||    
T  44708615 cctct 44708619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 207 - 434
Target Start/End: Complemental strand, 54407417 - 54407192
Alignment:
Q  207 tgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtcccct 306  Q
    |||||||||||||||||||| ||||||         |||||| |||||||||||||||||||||         |||||||||| | ||||||||||||||    
T  54407417 tgggcctccctcagtcatgggcctcaatttttttttaatacctactagtactactgccctccaatttttttttaatacccccagctattttctgtcccct 54407318  T
Q  307 tgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgta 405  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||    
T  54407317 tcttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttact-atgtatacggtagtcattttcacctttggatgta 54407219  T
Q  406 cggcatatatacccggcaccttatattta 434  Q
    | |||||||||  ||||||||||||||||    
T  54407218 ccgcatatata--cggcaccttatattta 54407192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 43207424 - 43207272
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  43207424 aatacccccagccattttctgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtata 43207325  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||||||| | ||||| |||||||||  ||||||||||||||||    
T  43207324 cggtagtcattttcaccttt-gatgtaccgcatatata--cggcaccttatattta 43207272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 243 - 498
Target Start/End: Original strand, 37168248 - 37168510
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnn-aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcc 341  Q
    ||||||||||||||||||||||||||||          |||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  37168248 aatacccactagtactactgccctccaattttttttttaatacccccagctattttatgtccccttgttttagccttttaggcctattataattaggtcc 37168347  T
Q  342 tcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------ttt 433  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||||| |||  ||||||||  ||||||||||||       |||    
T  37168348 tcttgcttttagtgttaggtgggagttcctcatgtatacggtagtcattttcacctttgggtataccacatatata--cggcaccttatatttatctttt 37168445  T
Q  434 aaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    |||||||||||||||| ||||| |||||         ||||||||||||||||||||||| ||||    
T  37168446 aaaaaatataaatagaacattgtttttttaaaaaaaaatacgttttgattttatcactggcctct 37168510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 9878874 - 9878721
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||| || |||||||    
T  9878874 aatacccccagccattttctgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggcgttagatgggggttccttatgtata 9878775  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    || ||||||||||||||||||||||||| |||||||||  | ||||||||||||||    
T  9878774 cgatagtcattttcacctttgggtgtaccgcatatata--ctgcaccttatattta 9878721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 48157058 - 48157185
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||  ||||||||| ||||||||||    
T  48157058 aatacccccagccattttctgtccccttgttttagccttttaagcctactagaattacgtcctcttgcttttgatgttaagtgggggttcctcatgtata 48157157  T
Q  379 cggtagtcattttcacctttgggtgtac 406  Q
    | ||||||||||||||||||||||||||    
T  48157158 cagtagtcattttcacctttgggtgtac 48157185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 8073512 - 8073387
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttggtgggggtttctcatgtatacggtagtcatttt 391  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||    |||||| |||||||||||||||||||||||    
T  8073512 cattttatgtcctcttgttttagccttttaggcctattagaattagttcctattgcttttggtgttatgtggggttcctcatgtatacggtagtcatttt 8073413  T
Q  392 cacctttgggtgtacggcatatatac 417  Q
    ||| ||||||||||| ||||||||||    
T  8073412 cacttttgggtgtaccgcatatatac 8073387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 292 - 434
Target Start/End: Complemental strand, 3954071 - 3953930
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||| | |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||  ||||||    
T  3954071 cattttctgttctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggttttcattt 3953972  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| ||||||||| |||||||||  ||||||||| ||||||    
T  3953971 tcacctctgggtgtaccgcatatata--cggcaccttgtattta 3953930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 54619354 - 54619237
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  54619354 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatata 54619255  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  54619254 ta--cggcaccttgtattta 54619237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 316 - 461
Target Start/End: Complemental strand, 27078720 - 27078569
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  27078720 cttttaggattattagaattagttcatcttgattttggtgttaggtaggggtttctcatgtatacggtagtcattttcacctctgggtataccgcatata 27078621  T
Q  415 tacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
    ||  |||||| || ||       ||||||||||||||||||| |||||||||||    
T  27078620 ta--cggcactttgtatttatcttttaaaaaatataaatagaacattgcttttt 27078569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 316 - 461
Target Start/End: Complemental strand, 27084517 - 27084366
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  27084517 cttttaggattattagaattagttcatcttgattttggtgttaggtaggggtttctcatgtatacggtagtcattttcacctctgggtataccgcatata 27084418  T
Q  415 tacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
    ||  |||||| || ||       ||||||||||||||||||| |||||||||||    
T  27084417 ta--cggcactttgtatttatcttttaaaaaatataaatagaacattgcttttt 27084366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 38681244 - 38681127
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||||| ||||| |    
T  38681244 cttttaggattattagaattagttcctcttgattttggtgttaggtggggtttcctcatgtatacggtagtcattttcacctctggatgtaccgcataca 38681145  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  38681144 ta--cggcaccttgtattta 38681127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 18372427 - 18372525
Alignment:
Q  309 ttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtac 406  Q
    |||||||||||||||  |||||||||||| |||||||| |||||||||| | ||||| || |||||||||||||||||||||||||||| || ||||||    
T  18372427 ttttagccttttaggattattagaattagttcctcttgattttggtgttagatggggattcctcatgtatacggtagtcattttcacctctgtgtgtac 18372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 21582758 - 21582843
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||    
T  21582758 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatata--cggcaccttgtattta 21582843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 36716176 - 36716059
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||  |||| ||||||||| ||| ||||||||| ||||||||| |||||||    
T  36716176 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggtccctcacgtatacggtggtcgttttcacctctgggtgtaccgcatata 36716077  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  36716076 ta--cggcaccttgtattta 36716059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 29620539 - 29620423
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  ||||| |||||| |||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||| ||| | ||| |||||||    
T  29620539 cttttaggattattaaaattagttcctcttgattgtggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctggatataccgcatata 29620440  T
Q  415 tacccggcaccttatattt 433  Q
    ||  ||||||||| |||||    
T  29620439 ta--cggcaccttgtattt 29620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 47467671 - 47467756
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||||  ||||||||| ||||||    
T  47467671 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatata--cggcaccttgtattta 47467756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 498
Target Start/End: Complemental strand, 53149433 - 53149277
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaa 439  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| | || || |||||| |||||||||  ||||||||| ||       |||||||||    
T  53149433 ttttggtgttaggtgggggttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaa 53149336  T
Q  440 tataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    |||||||||| ||| ||| |||         | ||||||||||||||||||||||||||    
T  53149335 tataaatagaacatcgctcttttaaaaaaaaaaacgttttgattttatcactggtctct 53149277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 42098803 - 42098873
Alignment:
Q  362 ggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| |||||||||||||||||||||||||||| || || ||| |||||||||  ||||||||| ||||||    
T  42098803 ggggttcctcatgtatacggtagtcattttcacctctgagtataccgcatatata--cggcaccttgtattta 42098873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 29598040 - 29598080
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  29598040 ttttaggcctattagaattaggtcatcttgcttttggtgtt 29598080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 49393023 - 49393063
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  49393023 ttttaggcctattagaattaggtcctcttacttttggtgtt 49393063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 52374590 - 52374630
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  52374590 ttttaggcctattagaattgagtcctcttgcttttggtgtt 52374630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 49393097 - 49393136
Alignment:
Q  367 ttctcatgtatacggtagtcattttcacctttgggtgtac 406  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  49393097 ttctcatgtatacggtagtaatttttacctttgggtgtac 49393136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 434
Target Start/End: Original strand, 36605974 - 36606036
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||||||||||| ||||||| || ||||||||| |||||||||  ||||||||| ||||||    
T  36605974 ctcatgtatacggtagt-attttcatctctgggtgtaccgcatatata--cggcaccttgtattta 36606036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 48720597 - 48720555
Alignment:
Q  158 ttcaggcccgtccctgaggggtgcaaacagctcaacagagctg 200  Q
    ||||||| || |||||| |||||||||||||||||||||||||    
T  48720597 ttcaggcacggccctgacgggtgcaaacagctcaacagagctg 48720555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 28689461 - 28689395
Alignment:
Q  366 tttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||| ||| |||||||||||||| | ||  |||||||||  ||||||||| ||||||    
T  28689461 tttctcatgtatacggcagtgattttcacctttggatatatcgcatatata--cggcaccttgtattta 28689395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 54574929 - 54574876
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| |||||||||| |||||| ||||| || ||||||||||| ||||||||||    
T  54574929 ggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatac 54574876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 8420258 - 8420298
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  8420258 ttttaggcatattagaattgggttctcttgcttttggtgtt 8420298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 42453344 - 42453384
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||  |||||||| |||||||||||    
T  42453344 ttttaggcctattagaattgagtcctcttacttttggtgtt 42453384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 160 - 461
Target Start/End: Complemental strand, 20091579 - 20091280
Alignment:
Q  160 caggcccgtccctgaggggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtacta 259  Q
    |||||||||||||| |||||||||||||||||| |||||||        |||||||||||||||||| ||||||         ||||||||| |||||||    
T  20091579 caggcccgtccctggggggtgcaaacagctcaatagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccaccagtacta 20091488  T
Q  260 ctgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-g 358  Q
    |||||||||||         |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  20091487 ctgccctccaatttttttttaatacccccaaccattttatgtacccttgttttagccttttaggcctattagaattaggtcctcttacttttggtgttag 20091388  T
Q  359 gtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatc 451  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||       |||||||||||||||||||||    
T  20091387 gtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagatc 20091290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 243 - 461
Target Start/End: Complemental strand, 23551294 - 23551069
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcct 342  Q
    ||||||||||||||||||||||||||||||       |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  23551294 aatacccactagtactactgccctccaaaaaaaatttaatacccctagccattttttgtccccttgttttagctttttaggcctattagaattaggtcct 23551195  T
Q  343 cttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattt-------- 433  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||  || ||||||||||||            
T  23551194 cttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatata--cgacaccttatatttatctttta 23551097  T
Q  434 aaaaaatataaatagatcattgcttttt 461  Q
    ||||||||||||||||||||||||||||    
T  23551096 aaaaaatataaatagatcattgcttttt 23551069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 203 - 461
Target Start/End: Complemental strand, 48984107 - 48983843
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtc 302  Q
    |||||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||         |||||||||||||||||| |||     
T  48984107 gagctgggcctccctcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaatttttttttaatacccccaaccattttttgta 48984008  T
Q  303 cccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttggg 401  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  48984007 cccttgttttagccttttaggcctattagaattaagtcctcttacttttggtgttaggtgggggttcctcatgtatacggtagttattttcacctttggg 48983908  T
Q  402 tgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
    ||||| |||||||||  || |||||||||       ||||||||||||||||||||||||| |||||    
T  48983907 tgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatagatcattgtttttt 48983843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 160 - 461
Target Start/End: Complemental strand, 47985268 - 47984968
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    |||||||| |||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||         |||||||||||||| |    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtatt 47985177  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    ||||||||||||         |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||     
T  47985176 actgccctccaat-tttttttaatatccccagccattttctgtccccttgttttagtcttttaggcctattagaattaggtcctcttgctttttgtgtta 47985078  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattt--------aaaaaatataaataga 449  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||  |||||||||||||||        ||||||||||||||||    
T  47985077 ggtgggggttcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatata--cggcaccttatatttttcttttaaaaaaatataaataga 47984980  T
Q  450 tcattgcttttt 461  Q
     |||||||||||    
T  47984979 acattgcttttt 47984968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 243 - 498
Target Start/End: Complemental strand, 10329632 - 10329372
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcct 342  Q
    |||||||||||||||||||||||||||| |       |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10329632 aatacccactagtactactgccctccaatatttttt-aatacccccagccattttttgtccccttgttttagccttttacgcctattagaattaggtcct 10329534  T
Q  343 cttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------ttta 434  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |  ||||||||  ||||||||||||       ||||    
T  10329533 cttgcttttggtgttaagtgggggtttctcatgtatacggtagtcattttcacctttgggttttcctcatatata--cggcaccttatatttatctttta 10329436  T
Q  435 aaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    ||||||||||||||| |||||||||||         ||||||||||||||||||||||| ||||    
T  10329435 aaaaatataaatagaacattgcttttttttaaaaaaatacgttttgattttatcactggcctct 10329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 243 - 434
Target Start/End: Complemental strand, 24525907 - 24525718
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcct 342  Q
    ||||||||||||||||||||||||||||         |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  24525907 aatacccactagtactactgccctccaat-tttttttaatacccccagccattttctgcccccttgttttagccttttaggcatattagaattaggtcct 24525809  T
Q  343 cttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||  |||||| ||||||||||||||||    
T  24525808 cttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttttgggtgtaccgc--atatacacggcaccttatattta 24525718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 280 - 493
Target Start/End: Original strand, 19692010 - 19692229
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||    
T  19692010 aatacccccaaccattttctgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggcgagggttcctcatgtata 19692109  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnnta 471  Q
    ||  |||||||||||||||| ||||||| |||||||||   |||||||||||       ||||||||||||||||||| ||||||| |||         |    
T  19692110 cgaaagtcattttcacctttaggtgtaccgcatatata--tggcaccttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaa 19692207  T
Q  472 tacgttttgattttatcactgg 493  Q
    ||||||||||||||||||||||    
T  19692208 tacgttttgattttatcactgg 19692229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 203 - 434
Target Start/End: Complemental strand, 38415138 - 38414909
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtc 302  Q
    ||||||||||||||| |||||||| ||||||         |||||||||||||| || ||||||||||         ||||||| || ||||||||| |     
T  38415138 gagctgggcctcccttagtcatgggcctcaaattttttttaatacccactagtattattgccctccaat-tttttttaataccctcagccattttctatt 38415040  T
Q  303 cccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttggg 401  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  38415039 cccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttggg 38414940  T
Q  402 tgtacggcatatatacccggcaccttatattta 434  Q
    |||||  ||||||||  || |||||||||||||    
T  38414939 tgtaccacatatata--cgtcaccttatattta 38414909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 25010371 - 25010476
Alignment:
Q  302 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25010371 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgg 25010470  T
Q  401 gtgtac 406  Q
    ||||||    
T  25010471 gtgtac 25010476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 280 - 434
Target Start/End: Original strand, 8239601 - 8239756
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtg--ggggtttctcatgta 376  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||| ||||| ||    
T  8239601 aatacccccaaccatttgttgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaagtggaggggttcctcatata 8239700  T
Q  377 tacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||| |||||||||| |||||||||||  ||||||||  |||||| |||||||||    
T  8239701 tacggtaatcattttcacatttgggtgtaccacatatata--cggcacattatattta 8239756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 299 - 434
Target Start/End: Complemental strand, 8171706 - 8171572
Alignment:
Q  299 tgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctt 397  Q
    ||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||     
T  8171706 tgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctc 8171607  T
Q  398 tgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||| |||||||||  ||||||||| ||||||    
T  8171606 tgggtgtaccgcatatata--cggcaccttgtattta 8171572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 18776916 - 18776799
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||    
T  18776916 cttttaggattattagaattagttcctcttgtttttggtgttaggtgggggtttctcatgtatacggtagtcattttcacatctgggtgtaccgcatata 18776817  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  18776816 ta--cggcaccttgtattta 18776799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 328 - 417
Target Start/End: Original strand, 29077184 - 29077274
Alignment:
Q  328 ttagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  29077184 ttagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatac 29077274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 10955468 - 10955553
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||| |||||||||  ||||||||||||||||    
T  10955468 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatata--cggcaccttatattta 10955553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 12596405 - 12596320
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||  ||||||||  ||||||||| ||||||    
T  12596405 ttttggtgttaggtgggggttcctcatgcatacggtagtcattttcacctctgggtgtaccacatatata--cggcaccttgtattta 12596320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 9021896 - 9021848
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  9021896 ctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatac 9021848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 7398380 - 7398420
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  7398380 ttttaggcctattagaattgggtcctcttgcttttggtgtt 7398420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 17800394 - 17800354
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  17800394 ttttaggcctattagaattgggtcctcttgcttttggtgtt 17800354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 36891579 - 36891632
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||||| |||||||||||||| ||||| | ||||||||    
T  36891579 ggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatac 36891632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 23859002 - 23859042
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  23859002 ttttaggcctattagaattgggtcctcttgcatttggtgtt 23859042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 23859079 - 23859127
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||||||||||| ||||||| |||||||||||  ||||||||||    
T  23859079 ctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatac 23859127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 6765771 - 6765729
Alignment:
Q  375 tatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||||| |||||||||||||| |||||||| |||||||    
T  6765771 tatacggtagtgattttcacctttggatgtacggcttatatac 6765729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 9014863 - 9014825
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggt 402  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  9014863 ggttactcatgtatacggtagtgattttcacctttgggt 9014825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 17800317 - 17800269
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||| |||||||||| |||||||| |||||||||||  |||||||||    
T  17800317 ctcatgcatacggtagtgattttcacttttgggtgtacaacatatatac 17800269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 26917855 - 26917815
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||| |||||||||| |||| ||||||||||||||||    
T  26917855 ttttaggcttattagaattgggtcttcttgcttttggtgtt 26917815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 27237596 - 27237556
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| |||||||| |||||||    
T  27237596 ttttaggcctattagaattgggtcatcttgcttatggtgtt 27237556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 163 - 434
Target Start/End: Original strand, 40089328 - 40089590
Alignment:
Q  163 gcccgtccctgaggggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactg 262  Q
    ||||| || |||||||||||||||||||||||||||||        |||||||||||||||||| ||||||         ||||||||||||||||| ||    
T  40089328 gcccggccatgaggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtactagtg 40089419  T
Q  263 ccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtg 361  Q
    ||||||||         ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40089420 ccctccaatttttttttaataccctcagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 40089519  T
Q  362 ggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||  ||||||||||||||||    
T  40089520 ggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatata--cggcaccttatattta 40089590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 280 - 498
Target Start/End: Original strand, 34027500 - 34027723
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  34027500 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtata 34027599  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnnta 471  Q
    | |||||||||||||||||||||||||| |||||||||  || |||||||||       ||||||||||||||||||| |||||||||||         |    
T  34027600 ccgtagtcattttcacctttgggtgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatagaacattgctttttttaaaaaa-a 34027696  T
Q  472 tacgttttgattttatcactggtctct 498  Q
    |||||||||||||||||||||| ||||    
T  34027697 tacgttttgattttatcactggcctct 34027723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 160 - 406
Target Start/End: Complemental strand, 38352554 - 38352314
Alignment:
Q  160 caggcccgtccctgaggggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtact 258  Q
    |||||||| ||||||||||||||||||||||||||||||||        ||||||||| |||||||| ||||||          ||||||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctg--------ggcctcccttagtcatgggcctcaaaaaaaaaattaatacccactagtact 38352463  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    |||||| |||||         |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  38352462 actgccttccaatttttttttaatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcatcttgcttttggtgtta 38352363  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtac 406  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  38352362 ggtgggggttcctcatgtacacggtagtcattttcacctttgggtgtac 38352314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 492
Target Start/End: Original strand, 32128505 - 32128723
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  32128505 aatacccccagccattttatgtccccttgtttcagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggtttcttatgtata 32128604  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnnta 471  Q
    |||||||||||||||||||||||||||| |||||||||  || |||||||||       ||||||||||||||||||| ||||||| |||         |    
T  32128605 cggtagtcattttcacctttgggtgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaa 32128702  T
Q  472 tacgttttgattttatcactg 492  Q
    |||||||||||||||||||||    
T  32128703 tacgttttgattttatcactg 32128723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 243 - 434
Target Start/End: Original strand, 19498389 - 19498576
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcct 342  Q
    ||||||||||||||||||||||||||||         |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19498389 aatacccactagtactactgccctccaat-tttttttaatacccccagccattatctgtccccttgttttagccttttaggcctattagaattaggtcct 19498487  T
Q  343 cttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||    ||||||||||||||||    
T  19498488 cttgcttttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttggctgtaccgcatata----cggcaccttatattta 19498576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 203 - 406
Target Start/End: Original strand, 24969278 - 24969485
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtactactgccctccaaaannnnnnn--aatacccccaaccattttct 299  Q
    |||||||||||||||||||||||| ||||||          ||||||||||||||||||||||||||||           |||||||||| |||||||||    
T  24969278 gagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagtactactgccctccaatttttttttttaatacccccagccattttct 24969377  T
Q  300 gtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcaccttt 398  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  24969378 gtccccttgttttagccttttaggcctattagaattagatcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcaccttt 24969477  T
Q  399 gggtgtac 406  Q
    ||||||||    
T  24969478 gggtgtac 24969485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 243 - 492
Target Start/End: Complemental strand, 37777447 - 37777191
Alignment:
Q  243 aatacccactagtactactgccctccaaaannnnnnn-aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcc 341  Q
    ||||||||||||||||||||||||||||          |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||     
T  37777447 aatacccactagtactactgccctccaattttttttttaatacctccagctattttctgtccccttgttttagccttttaggcctattagaattaggtca 37777348  T
Q  342 tcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------ttt 433  Q
    |||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||       |||    
T  37777347 tcttgcttttggtgttagttgagggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatatttatctttt 37777250  T
Q  434 aaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactg 492  Q
    |||||||||||||||| |||| ||||||         ||||||||||||||||||||||    
T  37777249 aaaaaatataaatagaacattactttttttttaaaaaatacgttttgattttatcactg 37777191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 43455717 - 43455564
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||| |||||||||| ||||||||||    
T  43455717 aatacccccagccattttctgtccccttgttttagtcttttaggcctatttgaattaggtcctcttactttcggtgttaggtgggggttcctcatgtata 43455618  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  43455617 cggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatattta 43455564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 54083428 - 54083241
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  54083428 aatacccctagccattttctgtctccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtaggggttcctcatgtata 54083329  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
    ||||||||||||| | |||||||||||| |||||||||  ||||||||||||       ||||||||||||||||||||||||| |||||    
T  54083328 cggtagtcatttttatctttgggtgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagatcattgtttttt 54083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 280 - 434
Target Start/End: Original strand, 16844942 - 16845095
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||    
T  16844942 aatacccccgaccattttctgtccccttgttttagtcttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtata 16845041  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||||||||||| ||||||||||  ||||||||  || |||||||||||||    
T  16845042 cggtagtcattttcaccgttgggtgtactacatatata--cgacaccttatattta 16845095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 2790927 - 2790774
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||   || |||||||||| ||||||||||    
T  2790927 aatacccccagccattttatgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttgccattaggtgggggttcctcatgtata 2790828  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||    
T  2790827 cggtagtcattttcacctttgggtgtaccgcatatata--cggtaccttatattta 2790774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 16882581 - 16882428
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||  |||    
T  16882581 aatacccccagctattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgagggttccccatacata 16882482  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||||||| |||||||  | ||||||| ||||||||||||||||    
T  16882481 cggtagtcattttcaccttttggtgtac--cgtatatacacggcaccttatattta 16882428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 292 - 434
Target Start/End: Original strand, 47128920 - 47129061
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  47128920 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattt 47129019  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    | |||| ||||||||| |||||||||  ||||||||| ||||||    
T  47129020 ttacctctgggtgtaccgcatatata--cggcaccttgtattta 47129061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 35465040 - 35465166
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| || ||||||||||||||||| ||||    
T  35465040 cattttctgtcctcttgttttagccttttaggcctattagaattaggtcatgttgcttttggtgttaggtggggattcctcatgtatacggtagttattt 35465139  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||| ||| ||||||| ||||||||||    
T  35465140 tcacttttaggtgtaccgcatatatac 35465166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 35779499 - 35779373
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||  |||| ||||||||||||||| ||||||    
T  35779499 cattttctgccctcttgttttagccttttaggcctattagaattagttcctcttgcttttgatgttaggtgaaggttcctcatgtatacggtaatcattt 35779400  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||||| ||||||||||    
T  35779399 tcacctttgggtgtaccgcatatatac 35779373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 434
Target Start/End: Complemental strand, 34768741 - 34768607
Alignment:
Q  299 tgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctt 397  Q
    ||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||     
T  34768741 tgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtaatcattttcacctc 34768642  T
Q  398 tgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||| |||||||||  ||||||||||||||||    
T  34768641 tgggtgtaccgcatatata--cggcaccttatattta 34768607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 10978833 - 10978959
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||| | |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  10978833 cattttctgttctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattt 10978932  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||| | ||||||||| ||||||||||    
T  10978933 tcacttctgggtgtaccgcatatatac 10978959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 23509972 - 23509846
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||| ||||||||||||||    
T  23509972 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtctacggtagtcattt 23509873  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||| | ||||||| ||||||||||    
T  23509872 tcacctctaggtgtaccgcatatatac 23509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 292 - 434
Target Start/End: Original strand, 48209173 - 48209314
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||| |    
T  48209173 cattttctgtcctcttgttttagccttataggattattagaattagttcttcttgattttggtgttaggtgggggtttctcatgtatacggtagtcatat 48209272  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| | ||||||||| |||||||||  ||||||||| ||||||    
T  48209273 tcacatctgggtgtaccgcatatata--cggcaccttgtattta 48209314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 13460140 - 13460266
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||  |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| || |||||||||||||||||||    
T  13460140 cattttctgtcttcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttccttatgtatacggtagtcattt 13460239  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||| | ||||| ||| ||||||||||    
T  13460240 tcacatctgggtataccgcatatatac 13460266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 38209741 - 38209624
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  38209741 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatata 38209642  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  38209641 ta--cggcaccttgtattta 38209624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 292 - 394
Target Start/End: Complemental strand, 10428379 - 10428276
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  ||||| |||||| |||||||| |||||||||| ||||| |||| ||||||||||||||||||||||    
T  10428379 cattttctgtcctcttgttttagccttttaggattattataattagttcctcttgattttggtgttaggtggaggttcctcatgtatacggtagtcattt 10428280  T
Q  391 tcac 394  Q
    ||||    
T  10428279 tcac 10428276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 316 - 403
Target Start/End: Original strand, 55255226 - 55255314
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtg 403  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  55255226 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtg 55255314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 498
Target Start/End: Original strand, 54780777 - 54780923
Alignment:
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagat 450  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||       |||||||||||||||||||     
T  54780777 ggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaatataaatagaa 54780874  T
Q  451 cattgct-ttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    ||||||| ||||         ||||||||||||||||||||||| ||||    
T  54780875 cattgctcttttaaaaaaaaaatacgttttgattttatcactggcctct 54780923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 5128960 - 5128875
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||| || |||||||||  ||||||||| ||||||    
T  5128960 ttttggtgttaggtggaggttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatata--cggcaccttgtattta 5128875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 1105521 - 1105591
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||||||    
T  1105521 ttttggtgttaggtgggggttgctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatac 1105591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 32915374 - 32915459
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||| |||| |||||||||  ||||||||  ||||||||| ||||||    
T  32915374 ttttggtgttaggtgggggttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatata--cggcaccttgtattta 32915459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 37514648 - 37514733
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||||||||| || |||||| |||||||||  ||||||||| ||||||    
T  37514648 ttttggtgttaggtggggattcttcatgtatacggtagtcattttcacctctgagtgtaccgcatatata--cggcaccttgtattta 37514733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 4167992 - 4167924
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| |||||||||| |||||| |||||||||||||||||||  |||||||||  ||||||||| ||||||    
T  4167992 ggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatata--cggcaccttgtattta 4167924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 36118631 - 36118590
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  36118631 cttttaggcctattagaattgggtcatcttgcttttggtgtt 36118590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 2135491 - 2135451
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  2135491 ttttaggcttattagaattgggtcctcttgcttttggtgtt 2135451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 37746894 - 37746854
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  37746894 ttttaggcctattagaattgggtcatcttgcttttggtgtt 37746854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 39329565 - 39329525
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  39329565 ttttaggcctattagaatttggtcttcttgcttttggtgtt 39329525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 461
Target Start/End: Original strand, 24969505 - 24969535
Alignment:
Q  431 tttaaaaaatataaatagatcattgcttttt 461  Q
    |||||||||||||||||||||||||||||||    
T  24969505 tttaaaaaatataaatagatcattgcttttt 24969535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 15735030 - 15735070
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  15735030 ttttaggcctgttagaattgggtcttcttgcttttggtgtt 15735070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 27112036 - 27112088
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatata 416  Q
    |||| ||||||||||||||||| |||||||| ||| ||||||  |||||||||    
T  27112036 ggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatata 27112088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 30507245 - 30507205
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  30507245 ttttaggcctataagaattgagtcctcttgcttttggtgtt 30507205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 36178607 - 36178647
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||| ||||||||  |||||||||||||||||||||    
T  36178607 ttttaggcccattagaatcgggtcctcttgcttttggtgtt 36178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 40217164 - 40217204
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| | ||||||||||||||    
T  40217164 ttttaggcctattagaattgggtcattttgcttttggtgtt 40217204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 203 - 498
Target Start/End: Complemental strand, 16199056 - 16198754
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgt 301  Q
    |||||||||||||||||||||||| ||||||          ||||||||||| ||||||||||||||||         |||||||||| |||||||||||    
T  16199056 gagctgggcctccctcagtcatgggcctcaattttttttttaatacccactaatactactgccctccaatttttttttaatacccccagccattttctgt 16198957  T
Q  302 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16198956 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgg 16198857  T
Q  401 gtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactgg 493  Q
    |||||  |||||||||  || |||||||||       ||||||||||||||||||| |||||||||||         |||||||||||||||||||||||    
T  16198856 gtgtatcgcatatata--cgacaccttatatttatcttttaaaaaatataaatagaacattgctttttaaaaaaaaaatacgttttgattttatcactgg 16198759  T
Q  494 tctct 498  Q
     ||||    
T  16198758 cctct 16198754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 160 - 498
Target Start/End: Original strand, 27923885 - 27924222
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    ||||||||||||||||||| ||||||||||||||||||||||        | |||||||||||||||| ||||||         ||||||||||||||||    
T  27923885 caggcccgtccctgagggggtgcaaacagctcaacagagctg--------gacctccctcagtcatgggcctcaatttttttttaatacccactagtact 27923976  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    ||||||||||||         |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||     
T  27923977 actgccctccaatttttttttaatatccccaaccattttctgtctccttgttttagtcttttaggcctattagaattaggtccttttgcttttggtgtta 27924076  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagat 450  Q
    || ||| ||| ||||||||||||||||||||||| |||||||| ||||| |||||||||  ||||||||||||       |||||||||||||||||| |    
T  27924077 ggcgggcgttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaataggt 27924174  T
Q  451 cattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    |||||||||||         ||||||||||||||||||||||| ||||    
T  27924175 cattgcttttttttaaaaaaatacgttttgattttatcactggcctct 27924222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 203 - 498
Target Start/End: Original strand, 9364130 - 9364431
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtc 302  Q
    |||||||||||||||||||||||| ||||||         |||| |||||||||||||||| ||||||         |||||||||| ||||||| ||||    
T  9364130 gagctgggcctccctcagtcatgggcctcaatttttttttaatatccactagtactactgctctccaatttttttttaatacccccagccattttatgtc 9364229  T
Q  303 cccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttggg 401  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  9364230 cccttgttttagtcttttaggtctattagaattaggtcctcttgcttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctttggg 9364329  T
Q  402 tgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactggt 494  Q
    ||||| |||||||||  ||||||||||||       ||||||||||||||||||| ||||||||||          |||||||||||||||||||||||     
T  9364330 tgtaccgcatatata--cggcaccttatatttatcttttaaaaaatataaatagaacattgcttttaaaaaaaaaaatacgttttgattttatcactggc 9364427  T
Q  495 ctct 498  Q
    ||||    
T  9364428 ctct 9364431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 160 - 461
Target Start/End: Original strand, 7670728 - 7671028
Alignment:
Q  160 caggcccgtccctgaggggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtacta 259  Q
    |||||||| ||||||||||||||||||||||||||||| ||        ||||||||||||||||||  || ||         || ||||||||||||||    
T  7670728 caggcccggccctgaggggtgcaaacagctcaacagagttg--------ggcctccctcagtcatgggtcttaatttttttttaacacccactagtacta 7670819  T
Q  260 ctgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-g 358  Q
    ||| |||||||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7670820 ctgtcctccaatttttttttaatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttag 7670919  T
Q  359 gtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattt--------aaaaaatataaatagat 450  Q
    |||||| |  |||||||||||||||||||||||||||||||||||||| | | |||||  |||||||||||||||        ||||||||||||||||     
T  7670920 gtggggatacctcatgtatacggtagtcattttcacctttgggtgtaccgtaaatata--cggcaccttatatttatcttttaaaaaaatataaatagaa 7671017  T
Q  451 cattgcttttt 461  Q
    |||||||||||    
T  7671018 cattgcttttt 7671028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 38869547 - 38869394
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38869547 aatacccccagtcattttctgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggtttctcatgtata 38869448  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||||||||||||||| |||||||||  || |||||||||||||    
T  38869447 cggtagtcattttcacctttgggtgtaccgcatatata--cgacaccttatattta 38869394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 284 - 434
Target Start/End: Complemental strand, 28822522 - 28822373
Alignment:
Q  284 cccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggt 382  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  28822522 cccccaaccattttatgtccccttgttttagtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcatcatgtatacggt 28822423  T
Q  383 agtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  28822422 agtcattttcacctttgggtgtaccgcatatata--cggcaccttatattta 28822373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 160 - 459
Target Start/End: Complemental strand, 40389831 - 40389535
Alignment:
Q  160 caggcccgtccctgag-gggtgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    |||||||| ||||||| ||||||||||||||||||||| |||        |||||||||||||||||||||||||         ||||||||||||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctg--------ggcctccctcagtcatggacctcaatttttttt-aatacccactagtact 40389741  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    | |||| |||||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  40389740 attgccatccaat-tgtttttaatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttagtgtta 40389642  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagat 450  Q
    |||||||||| |||||  ||||||||||||||||||||||||| ||||| |||||||||  || |||||||||       |||||||||||||||||||     
T  40389641 ggtgggggttcctcataaatacggtagtcattttcacctttggatgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatagaa 40389544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 16799510 - 16799358
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    |||||||||| || |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  16799510 aatacccccagccttttt-tgtccccttgttttagtcttttaggtctattagaattaggtcctcttgcttttggtgttatgtgggggttcctcatgtata 16799412  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||| |||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  16799411 cggtaatcattttcacctttgggtgtaccgcatatata--cggcaccttatattta 16799358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 16592243 - 16592120
Alignment:
Q  295 tttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttca 393  Q
    ||||||||  |||||||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||    
T  16592243 tttctgtcatcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatatatacggtagtcattttca 16592144  T
Q  394 cctttgggtgtacggcatatatac 417  Q
    ||| ||||||||| ||||||||||    
T  16592143 cctctgggtgtaccgcatatatac 16592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 292 - 498
Target Start/End: Original strand, 27078939 - 27079152
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| |||||||||||||||||||  |||| ||||||| ||||||   |||||||||| |||||||||| ||||||||||| ||||||||||    
T  27078939 cattttctgtcctcttgttttagccttttaggattattggaattagttcctctatattttggtgttaggtgggggttcctcatgtatacagtagtcattt 27079038  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgct-ttttnnnnnnnntatacgttttgat 482  Q
    |||||||| ||||||| |||||||||  ||||||||| ||       ||||||||||||||||||| ||||||| ||||         ||||||||||||    
T  27079039 tcacctttaggtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaaatacgttttgat 27079136  T
Q  483 tttatcactggtctct 498  Q
    ||||||||||| ||||    
T  27079137 tttatcactggcctct 27079152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 292 - 434
Target Start/End: Original strand, 30854258 - 30854398
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||| ||||| |||||||||||||||||||  |||||||||||| |||||||  |||||||||| |||||||||| |||||||||||| |||||||||    
T  30854258 cattttatgtcctcttgttttagccttttaggattattagaattagttcctctta-ttttggtgttaggtgggggttcctcatgtatacgatagtcattt 30854356  T
Q  391 tcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||| || |||||| |||||||||  ||||||||| ||||||    
T  30854357 tcacctctgagtgtaccgcatatata--cggcaccttgtattta 30854398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 34756514 - 34756397
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  34756514 cttttaggattattagaattagttcctcttgattttgttgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatata 34756415  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  34756414 ta--cggcaccttgtattta 34756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 36187995 - 36187910
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||    
T  36187995 ttttggtgttaggtggaggtttctcatgtatacggtagtcattttcacctctgggtgtaccgcatatata--cggcaccttgtattta 36187910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 22986719 - 22986604
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttggtgggggtttctcatgtatacggtagtcatttt 391  Q
    |||||||||||| ||||||||||| |||||||  |||||||||||| |||||||  |||| |          ||||||||||||||||||||||||||||    
T  22986719 cattttctgtcctcttgttttagcattttaggattattagaattagttcctcttaatttttg----------ggtttctcatgtatacggtagtcatttt 22986630  T
Q  392 cacctttgggtgtacggcatatatac 417  Q
    ||||| ||||||||| ||||||||||    
T  22986629 cacctatgggtgtaccgcatatatac 22986604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 19523183 - 19523268
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||    
T  19523183 ttttggtgttaggtgggggttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatata--cggcaccttgtattta 19523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 2274874 - 2274944
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  2274874 ttttggtgttaggtgggggttcctcgtgtatacggtagtcattttcacctctgggtgtactgcatatatac 2274944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 15480205 - 15480135
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  15480205 ttttggtgttaggtgggggttcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatac 15480135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 23284164 - 23284108
Alignment:
Q  361 gggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  23284164 gggggttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatac 23284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 498
Target Start/End: Complemental strand, 31194705 - 31194573
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgcttttt 461  Q
    ||||||||||||||||| |||||||||| ||||| ||| |||||||||  ||||||||| ||       ||||||||||||||||||| ||||||| |||    
T  31194705 ctcatgtatacggtagt-attttcacctctgggtttaccgcatatata--cggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 31194609  T
Q  462 nnnnnnnntatacgttttgattttatcactggtctct 498  Q
             ||||||||||||||||||||||||||||    
T  31194608 taaaagaa-atacgttttgattttatcactggtctct 31194573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 40794426 - 40794385
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgta 405  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  40794426 ggtttctcatgtatacggtagtgattttcaccttttggtgta 40794385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 11242489 - 11242449
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  11242489 ttttatgcctattagaattgggtcctcttgcttttggtgtt 11242449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 15639575 - 15639615
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  15639575 ttttaggcctattagaattgggtcctcttacttttggtgtt 15639615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 34425832 - 34425872
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  34425832 ttttaggcctattagaattgagtcctcttgcttttggtgtt 34425872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 36868970 - 36868922
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||||||||||| |||||||| |||||||||||  |||||||||    
T  36868970 ctcatgtatacggtagtgattttcacatttgggtgtaccacatatatac 36868922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 2530996 - 2530943
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||| | ||||||||    
T  2530996 ggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatac 2530943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 10543682 - 10543727
Alignment:
Q  372 atgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||| |||||||||||||| ||||  ||||||||||    
T  10543682 atgtatacggtagtgattttcacctttggatgtatcgcatatatac 10543727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 33037781 - 33037834
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||| |  |||||||||||||||||||  |||||||||    
T  33037781 ggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatac 33037834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 2024811 - 2024771
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||| ||||||||||  ||||||||||||||||||||    
T  2024811 ttttaggcatattagaattgagtcctcttgcttttggtgtt 2024771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 7079561 - 7079601
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  7079561 ttttagacctattagaattaggtcatcttgcttttgatgtt 7079601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 26719043 - 26718995
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||| ||||||| ||||||||||||| |||||  ||||||||||    
T  26719043 ctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatac 26718995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 26988787 - 26988739
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||| ||||||| ||||||||||||| |||||  ||||||||||    
T  26988787 ctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatac 26988739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 40794496 - 40794456
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||| |||||||||| ||||||||| |||||||||||    
T  40794496 ttttaggcttattagaattgggtcctcttacttttggtgtt 40794456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 160 - 498
Target Start/End: Complemental strand, 27507041 - 27506704
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnn-aatacccactagtac 257  Q
    ||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||          |||||||| ||||||    
T  27507041 caggcccgtccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaattttttttttaatacccattagtac 27506950  T
Q  258 tactgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||       |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27506949 tactgccctccaaaaaaaatttaatacccccagccattttctgtctccttgttttagccttttaggcctattagaattaggtcatcttgcttttggtgtt 27506850  T
Q  358 -ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaataga 449  Q
     |||||| ||| ||||||||||| ||||||||||| ||||||||||||||  ||||||||  ||||||||||||       |||||||||||||||||||    
T  27506849 aggtgggagttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatata--cggcaccttatatttatcttttaaaaaatataaataga 27506752  T
Q  450 tcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    ||||||||||||         ||||||||||||||||||||||| ||||    
T  27506751 tcattgcttttttttaaaaa-atacgttttgattttatcactggcctct 27506704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 10762752 - 10762599
Alignment:
Q  280 aatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtata 378  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  10762752 aataccctcagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcatttggtgttaggtgggggttcctcatgtata 10762653  T
Q  379 cggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    ||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||    
T  10762652 cggtagtcattttcacctttgggtgtaccacatatatacc--gcaccttatattta 10762599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 203 - 434
Target Start/End: Original strand, 9045868 - 9046097
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgccctccaaaannnnnnnaatacccccaaccattttctgtc 302  Q
    |||||||||||||||||||||||| ||||||         |||||||| ||||| |||||||||||||         |||||||||| | ||||| ||||    
T  9045868 gagctgggcctccctcagtcatgggcctcaatttttttttaatacccattagtattactgccctccaat-tttttttaatacccccagctattttatgtc 9045966  T
Q  303 cccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttggg 401  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  9045967 cccttgttttagtcttttaggcttattagaattaggtcctcttgctttttgtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggg 9046066  T
Q  402 tgtacggcatatatacccggcaccttatattta 434  Q
    ||||| |||||||||  ||||||||||||||||    
T  9046067 tgtaccgcatatata--cggcaccttatattta 9046097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 160 - 492
Target Start/End: Original strand, 26715931 - 26716262
Alignment:
Q  160 caggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtact 258  Q
    |||||||| |||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||         |||||||||||||| |    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccactagtatt 26716022  T
Q  259 actgccctccaaaannnnnnnaatacccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt- 357  Q
    |||||||| |||         |||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||     
T  26716023 actgcccttcaat-tttttttaatacccccagccattttatgtccccttgttttagtcttttagacctattagaattaggttctcttgctttttgtgtta 26716121  T
Q  358 ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattt--------aaaaaatataaataga 449  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||        ||||||||||||||||    
T  26716122 ggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--tggcaccttatatttatcttttaaaaaaatataaataga 26716219  T
Q  450 tcattgctttttnnnnnnnntatacgttttgattttatcactg 492  Q
     ||||||| |||         ||||||||||||||||||||||    
T  26716220 acattgctcttttaaaaaaaaatacgttttgattttatcactg 26716262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 159 - 434
Target Start/End: Original strand, 24410235 - 24410505
Alignment:
Q  159 tcaggcccgtccctgagggg-tgcaaacagctcaacagagctgttgagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtac 257  Q
    |||||||||||||| ||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||         |||||||| ||||||    
T  24410235 tcaggcccgtccctaagggggtgcaaacagctcaacagagctg--------ggcctccctcagtcatgggcctcaatttttttttaatacccattagtac 24410326  T
Q  258 tactgccctccaaaannnnnnn-aatacccccaaccattttctgtcccc-ttgttttagccttttaggcctattagaattaggtcctcttgcttttggtg 355  Q
    |||| ||||||||          |||||||||| | ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  24410327 tactaccctccaattttttttttaatacccccagctattttctgtcccccttgttttagccttttaggccaattagaattaggtcctcttgtttttggtg 24410426  T
Q  356 tt-ggtgggggtttc-tcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    || |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  24410427 ttaggtggggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatata--cggcaccttatattta 24410505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 29940037 - 29939911
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  29940037 cattttctgtcctcttgttttaaccttttaggtctattagaattagttcctcttgcttttggtgttaggtggtggttcctcatgtatacggtagtcattt 29939938  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||||| ||||||||||    
T  29939937 tcacctttgggtgtaccgcatatatac 29939911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 203 - 367
Target Start/End: Original strand, 8327503 - 8327669
Alignment:
Q  203 gagctgggcctccctcagtcatggacctcaannnnnnnnnaatacccactagtactactgccctccaaaannnnnnnaatacccccaa-ccattttctgt 301  Q
    |||||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||         ||||||||| | |||||||||||    
T  8327503 gagctgggcctccctcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaatttttttttaataccccccagccattttctgt 8327602  T
Q  302 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8327603 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggtt 8327669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 3155168 - 3155285
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||    
T  3155168 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatata 3155267  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  3155268 ta--cggcaccttgtattta 3155285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 4505845 - 4505962
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  4505845 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatata 4505944  T
Q  415 tacccggcaccttatattta 434  Q
    ||  ||||||||| ||||||    
T  4505945 ta--cggcaccttgtattta 4505962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 417
Target Start/End: Original strand, 6964968 - 6965060
Alignment:
Q  326 tattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  6964968 tattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatac 6965060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 8907230 - 8907128
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  8907230 cttttaggattattagaattaattcctcttgattttggtgttaggtgggggtttctcatgtatacggtagtcatttttacctctgggtgtaccgcatata 8907131  T
Q  415 tac 417  Q
    |||    
T  8907130 tac 8907128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 416
Target Start/End: Complemental strand, 12337599 - 12337498
Alignment:
Q  316 cttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatata 414  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||  ||||||    
T  12337599 cttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatata 12337500  T
Q  415 ta 416  Q
    ||    
T  12337499 ta 12337498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 3952989 - 3953074
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| |||||||||| |||||| |||||||| |||||||||||| ||||||||| |||| ||||  ||||||||| ||||||    
T  3952989 ttttggtgttaggtgggggttcctcatgcatacggtaatcattttcacctctgggtgtaccgcatgtata--cggcaccttgtattta 3953074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 7162767 - 7162852
Alignment:
Q  348 ttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||||||||| ||| |||||| ||||| |||||||||||||||||||||| || || ||| |||||||||  ||||||||| ||||||    
T  7162767 ttttggtgttaggtaggggttcctcatatatacggtagtcattttcacctctgagtataccgcatatata--cggcaccttgtattta 7162852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 16097008 - 16097076
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| |||||||||| |||||| ||||||||||||||||||||  ||||||||  ||||||||| ||||||    
T  16097008 ggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatata--cggcaccttgtattta 16097076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 37182670 - 37182723
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  37182670 ggttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatac 37182723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 10252335 - 10252375
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  10252335 ttttaggcctattagaattgggtcatcttgcttttggtgtt 10252375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 24035719 - 24035679
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  24035719 ttttaggtctattagaattaggtcctcttgcttttagtgtt 24035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 29694312 - 29694352
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  29694312 ttttagacctattagaattgggtcctcttgcttttggtgtt 29694352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 8327690 - 8327756
Alignment:
Q  431 tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgttttgattttatcactggtctct 498  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||||    
T  8327690 tttaaaaaatataaatagatcattgcttttttaaaaaaa-atacgttttgattttatcactgatctct 8327756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 22727598 - 22727551
Alignment:
Q  370 tcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    ||||||||| |||||| |||||||| ||||||||||| ||||||||||    
T  22727598 tcatgtatatggtagtgattttcacttttgggtgtaccgcatatatac 22727551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 12134134 - 12134089
Alignment:
Q  372 atgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||| |||||||| ||||||||||  ||||||||||    
T  12134134 atgtatacggtagtgattttcacttttgggtgtatcgcatatatac 12134089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 28425812 - 28425759
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||| |||| |||||| |||||||| ||||||||||| ||||||||||    
T  28425812 ggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatac 28425759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 11912932 - 11912892
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| ||||| ||||||||||    
T  11912932 ttttaggcctattagaattgggtcatcttgattttggtgtt 11912892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 12134214 - 12134174
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  12134214 ttttaggcctattagaattgagttctcttgcttttggtgtt 12134174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 37182598 - 37182638
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| |||| ||||||||||| ||||    
T  37182598 ttttaggcctattagaattgggtcatcttgcttttgctgtt 37182638  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 38400726 - 38400766
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  38400726 ttttaggcctattagaatagggtcatcttgcttttggtgtt 38400766  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 38400798 - 38400850
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatata 416  Q
    |||| ||||||||||||||||| |||||||||||||  ||||  |||||||||    
T  38400798 ggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatata 38400850  T

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Target: scaffold0039 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 285 - 498
Target Start/End: Original strand, 106459 - 106678
Alignment:
Q  285 ccccaaccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggta 383  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  106459 ccccagccattttatgtccccttgttttagtcttttaggcctattagatttaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggta 106558  T
Q  384 gtcattttcacctttgggtgtacggcatatatacccggcaccttata-------tttaaaaaatataaatagatcattgctttttnnnnnnnntatacgt 476  Q
    ||||||||||||||||||||||| |||||||||  || |||||||||       ||||||||||||||||||| ||||| | |||         ||||||    
T  106559 gtcattttcacctttgggtgtaccgcatatata--cgacaccttatatttatcttttaaaaaatataaatagaacattgttcttttaaaaaaaaatacgt 106656  T
Q  477 tttgattttatcactggtctct 498  Q
    ||||||||||||||||| ||||    
T  106657 tttgattttatcactggcctct 106678  T

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Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 106379 - 106420
Alignment:
Q  160 caggcccgtccctgag-gggtgcaaacagctcaacagagctg 200  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctg 106420  T

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Target: scaffold0070 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 1271 - 1397
Alignment:
Q  292 cattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattt 390  Q
    |||||| ||||| ||||||||| |||||||||  ||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  1271 cattttttgtcctcttgttttaaccttttaggattattaaaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattt 1370  T
Q  391 tcacctttgggtgtacggcatatatac 417  Q
    ||| || ||||||||| ||||||||||    
T  1371 tcatctctgggtgtaccgcatatatac 1397  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 181903 - 181969
Alignment:
Q  348 ttttggtgttgg-tgggggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatat 413  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||    
T  181903 ttttggtgttagatgggggttcctcatgtatacggtagtcattttcacctctggatgtaccgcatat 181969  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 206591 - 206538
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  206591 ggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatac 206538  T

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Target: scaffold1590 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 354 - 307
Alignment:
Q  370 tcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  354 tcatgtatacggtagtgattttcacatttgggtgtaccgcatatatac 307  T

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Target: scaffold0227 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 16028 - 16081
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||||||||||||||| ||||||| |||||| ||||| ||||| ||||    
T  16028 ggtttctcatgtatacggtagtgattttcatctttggatgtaccgcatacatac 16081  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 40012 - 40052
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  40012 ttttaggcctattagaattgggtcctcttgctttttgtgtt 40052  T

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Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 138072 - 138112
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  138072 ttttaggcctattagaattgggtcctcttgctttttgtgtt 138112  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 231033 - 230993
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  231033 ttttaggcctattagaatcgggtcctcttgcttttggtgtt 230993  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 230956 - 230908
Alignment:
Q  369 ctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||||||||| |||||| |||||||||||||||| ||  ||||||||||    
T  230956 ctcatgtataaggtagtgattttcacctttgggtatatcgcatatatac 230908  T

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Target: scaffold1320 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 1355 - 1423
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatacccggcaccttatattta 434  Q
    |||| |||||||||||| |||| |||||||| ||||||||||  |||||||||  | ||||||||||||||    
T  1355 ggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatata--cagcaccttatattta 1423  T

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Target: scaffold1320; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 1285 - 1325
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||| |||||||| ||||||||| |||||||||||    
T  1285 ttttaggcctgttagaattgggtcctcttacttttggtgtt 1325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 173612 - 173559
Alignment:
Q  364 ggtttctcatgtatacggtagtcattttcacctttgggtgtacggcatatatac 417  Q
    |||| |||| |||||||||||| ||||| |||||||||||||  ||||||||||    
T  173612 ggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatac 173559  T

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Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 173684 - 173644
Alignment:
Q  317 ttttaggcctattagaattaggtcctcttgcttttggtgtt 357  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  173684 ttttaggcctattagaattgagacctcttgcttttggtgtt 173644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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