View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3655_high_3 (Length: 422)
Name: NF3655_high_3
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3655_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 172 - 416
Target Start/End: Original strand, 11379263 - 11379506
Alignment:
| Q |
172 |
atgagaagacaaaaaatggctggtttttgacagggtgactatgaaactagtcatggtttgcatacaagcttagaatttgtcctttgtgaagtgtcatagc |
271 |
Q |
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| T |
11379263 |
atgagaagacaaaaaatggctggtttttgacagg-tgactatgaaactagtcatggtttgcatacaagcttagaatttgtcctttgtgaagtgtcatagc |
11379361 |
T |
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| Q |
272 |
cactttcaagttgtcctattaagctgtttatccaaacaggacttaagtccaaagttgtttgtgccactacaagaagtcttcattggttccaacaccctcc |
371 |
Q |
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| T |
11379362 |
cactttcaagttgtcctattaagctgtttatccaaacaggacttaagtccaaagttgtttgtgccactacaagaaaccttcataggttccaacaccctcc |
11379461 |
T |
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| Q |
372 |
aaccttctgaacaaagctctggcctactctttttgttcatctcac |
416 |
Q |
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| T |
11379462 |
aaccttctgaacaaagctctggcctactctttttgttcatatcac |
11379506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 11379133 - 11379254
Alignment:
| Q |
18 |
acatatacacaaaaattctgatttgccatatacactgcatatgttacaaaatatggtataaaaaactgagggaatgaacaatttgtaatcacaactatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11379133 |
acatatacacaaaaattctgatttgccatatacactgcatatgttacaaaatatggtataaaaaactgagggaatgaacaatttgtaatcacaactatat |
11379232 |
T |
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| Q |
118 |
ctgctagaaactaaatatatat |
139 |
Q |
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| T |
11379233 |
ctgctagaaactaaatatatat |
11379254 |
T |
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