View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3655_low_1 (Length: 581)
Name: NF3655_low_1
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3655_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 5 - 566
Target Start/End: Original strand, 34746558 - 34747118
Alignment:
| Q |
5 |
ataggttaaatatgagaaataattaaataccgaaaaatctttaacttatacaagacaagaattttacaaagatttatgccagaccgttttagttggttct |
104 |
Q |
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| T |
34746558 |
ataggttaaatatgagaaataattaaataccgaaaaatctttaacttatacaagacaagaattttacaaagatttatgccagaccgttttagttggttct |
34746657 |
T |
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| Q |
105 |
aatcaagtagatgtctctctaccaatgatgttgctaaaacattttcattagttctaagcttctaagagaaacaagtttcacttgttaggcacacattagc |
204 |
Q |
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| T |
34746658 |
aatcaagtagatgtctctctaccaatgatgttgctaaaacattttcattagttctaagcttctaagagaaacaagtttcacttgttaggcacacattagc |
34746757 |
T |
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| Q |
205 |
taggtaggttggtacaaaggattaaacaataattttacacagtaaatatgtatagctttatgcactacttggtgtacaatgttaaactctagggtaacga |
304 |
Q |
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| T |
34746758 |
taggtaggttggtacaaaggattaaacaataattttacacagtaaatatgtatagctttatgcactacttggtgtacaatgttaaactctagggtaacga |
34746857 |
T |
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| Q |
305 |
atttgatttgacaatgatnnnnnnntatgtacatatgtatataagtatatggtttggtttgagtcccacccaccctcaatatattctcaaatgctatttt |
404 |
Q |
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| T |
34746858 |
atttgatttgacaatgat-aaaaaatatgtacatatgtatataagtatatggtttggtttgagtcccacccaccctcaatatattctcaaatgctatttt |
34746956 |
T |
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| Q |
405 |
tgtccttgcaataataataatattgtaaaacaggtaaagcccttccatgaaggcaacattgagatacttagcaggaattgcagggcctagtggttttggc |
504 |
Q |
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| T |
34746957 |
tgtccttgcaataataataatattgtaaaacaggtaaagcccttccatgaaggcaacattgagatacttagcaggaattgcagggcctagtggttttggt |
34747056 |
T |
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| Q |
505 |
tcaaattcaacagcagaacaggttactcaaaattgctcttctttccttccttccggtctaac |
566 |
Q |
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| T |
34747057 |
tcaaattcaacagcagaacaagttactcaaaattgctcttctttccttccttccggtctaac |
34747118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 475 - 544
Target Start/End: Original strand, 43689160 - 43689229
Alignment:
| Q |
475 |
gcaggaattgcagggcctagtggttttggctcaaattcaacagcagaacaggttactcaaaattgctctt |
544 |
Q |
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| T |
43689160 |
gcaggcattgcagggcctagtggttttggctcaaattcaactgcagaacaagtcactcaacattgctctt |
43689229 |
T |
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