View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3655_low_3 (Length: 472)
Name: NF3655_low_3
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3655_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 12944922 - 12945374
Alignment:
| Q |
1 |
gagtataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12944922 |
gagtataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacg |
12945021 |
T |
|
| Q |
101 |
tgcaccccgcgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacaccttggcaaccgtccta |
200 |
Q |
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|||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| | |
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| T |
12945022 |
tgcaccccacgtgccgccaaaatcttcgccagctccttctgcttatccaccaatggatctccaccgtagccattaacaaagcaccttggcaaccgtccaa |
12945121 |
T |
|
| Q |
201 |
tcttttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccacatgagatcacctgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||| |
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| T |
12945122 |
tcttttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcgggcaaacataggaaccacatgaggtcacctgc |
12945221 |
T |
|
| Q |
301 |
tggtaatggtaatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgatccctcggatttta |
400 |
Q |
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| T |
12945222 |
tggtaatggtaatatacgatcgttgaccaaacgaagctcagattccgttctctggaccccactaaaaaatggatatttcattatgatccctcggatttta |
12945321 |
T |
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| Q |
401 |
atgggagagagatcaacgtcaagagcacgtagacctgcgaaataggctatgtt |
453 |
Q |
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||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
12945322 |
atgtgagagagatcaaggtcgagagcacgtagacctgcgaaataggctatgtt |
12945374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 5 - 453
Target Start/End: Original strand, 12937254 - 12937702
Alignment:
| Q |
5 |
ataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgca |
104 |
Q |
| |
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|||||||||||||| | ||||| || |||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
12937254 |
ataaatttcttaacgtaatcaagtaatgcttgtgccttagcaggatcaaagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgca |
12937353 |
T |
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| Q |
105 |
ccccgcgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacaccttggcaaccgtcctatctt |
204 |
Q |
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|||| ||||| | ||||||||| | |||||||||||| |||||||||| ||||| ||||||||||| || ||||| ||||| |||| |||||| ||||| |
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| T |
12937354 |
ccccacgtgcctccaaaatcttcactagctccttttgcctatccaccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatctt |
12937453 |
T |
|
| Q |
205 |
ttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccacatgagatcacctgctggt |
304 |
Q |
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||||| | || |||| || | ||||||| |||||| |||| |||| ||| | |||||||||||| | |||| |||||||||||||| ||||| | |
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| T |
12937454 |
ctcaccatgtatcacatccgaaacttttggattacaatacacgtgatcccgatctgtaccctcaggcaaagatagggcccacatgagatcacttgctgat |
12937553 |
T |
|
| Q |
305 |
aatggtaatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgatccctcggattttaatgg |
404 |
Q |
| |
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|| |||| |||| |||||| | |||||||||||||||| ||||| || ||||||| |||||| ||| |||||||| | |||| |||| |||| | |
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| T |
12937554 |
aagggtagtatattatcgttaatgaaacgaagctcagattttgttctctgaaccccaccaaaaaacggagcattcattataagcccttggatcttaagag |
12937653 |
T |
|
| Q |
405 |
gagagagatcaacgtcaagagcacgtagacctgcgaaataggctatgtt |
453 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||| || |||||||| |
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|
| T |
12937654 |
gagagagatcgaggtcaagagcacgtagacctgcgaagtacgctatgtt |
12937702 |
T |
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