View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3655_low_5 (Length: 347)
Name: NF3655_low_5
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3655_low_5 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: scaffold0127 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 27015 - 26695
Alignment:
| Q |
13 |
agcaaaggctaaaacattagacgttgcccgactcttccaatatacccaaacacttcctcctcacccattaccaccctcaccatcttacaagaataacctc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27015 |
agcaaaggctaaaacattagacgttgcccgactcttccaatatacccaaacacttcctcctcacccattaccaccctcaccatcttacaagaataacctc |
26916 |
T |
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| Q |
113 |
cctagtaacttatagcaagaatttaccgaaaaaacaacttgttggtttgcttcagctggttgtgtgaaaagtagagagccataccatgttgcaaatttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26915 |
cctagtaacttatagcaagaatttaccgaaaaaacaacttgttggtttgcttcagctggttgtgtgaaaagtagagagccataccatgttgcaaatttgt |
26816 |
T |
|
| Q |
213 |
tctttcgcgttgttggtgtgcaaatgacatggacagattttgcaacttagcttcttcaaatattatcaatttagtagtgaatatgttctcatgttgaaac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26815 |
tctttcgcgttgttggtgtgcaaatgacatggacagattttgcaacttagcttcttcaaatattatcgatttagtagtgaatatgttctcatgttgaaac |
26716 |
T |
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| Q |
313 |
atgaaattgaagaacattgtg |
333 |
Q |
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||||||||||||||||||||| |
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| T |
26715 |
atgaaattgaagaacattgtg |
26695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 41399145 - 41399465
Alignment:
| Q |
13 |
agcaaaggctaaaacattagacgttgcccgactcttccaatatacccaaacacttcctcctcacccattaccaccctcaccatcttacaagaataacctc |
112 |
Q |
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| T |
41399145 |
agcaaaggctaaaacattagacgttgcccgactcttccaatatacccaaacacttcctcctcacccattaccaccctcaccatcttacaagaataacctc |
41399244 |
T |
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| Q |
113 |
cctagtaacttatagcaagaatttaccgaaaaaacaacttgttggtttgcttcagctggttgtgtgaaaagtagagagccataccatgttgcaaatttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41399245 |
cctagtaacttatagcaagaatttaccgaaaaaacaacttgttggtttgcttcagctggttgtgtgaaaagtagagagccataccatgttgcaaatttgt |
41399344 |
T |
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| Q |
213 |
tctttcgcgttgttggtgtgcaaatgacatggacagattttgcaacttagcttcttcaaatattatcaatttagtagtgaatatgttctcatgttgaaac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41399345 |
tctttcgcgttgttggtgtgcaaatgacatggacagattttgcaacttagcttcttcaaatattatcgatttagtagtgaatatgttctcatgttgaaac |
41399444 |
T |
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| Q |
313 |
atgaaattgaagaacattgtg |
333 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41399445 |
atgaaattgaagaacattgtg |
41399465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 49067477 - 49067326
Alignment:
| Q |
178 |
gaaaagtagagagccataccatgttgcaaatttgttctttcgcgttgttggtgtgcaaatgacatggacagattttgcaacttagcttcttcaaatatta |
277 |
Q |
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||||| |||||||||| ||| || |||||| ||||||||| ||| |||||||||||||| |||| |||||||| ||||| || ||| ||||| | |
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| T |
49067477 |
gaaaattagagagccaaaccttggtgcaaagttgttctttggcggtgttggtgtgcaaaagacagggacagatattgca-----gcggctttaaataaca |
49067383 |
T |
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| Q |
278 |
tcaat-ttagtagtgaatatgttctcatgttgaaacatgaaattgaagaacattgtg |
333 |
Q |
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| || |||| |||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
49067382 |
tggatgttagcagtgaatatgttctcaagttgaaacatgaaattgaagaacagtgtg |
49067326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 31989814 - 31989859
Alignment:
| Q |
283 |
ttagtagtgaatatgttctcatgttgaaacatgaaattgaagaaca |
328 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
31989814 |
ttagtagtgaatatgttctcaagttgaaacatcaaattgaagaaca |
31989859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 32006009 - 32006066
Alignment:
| Q |
284 |
tagtagtgaatatgttctcatgtt-gaaacatgaaattgaagaacattgtgatgatgt |
340 |
Q |
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|||| ||||||||||||||| ||| ||||||||||| ||||||||| |||| |||||| |
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| T |
32006009 |
tagtcgtgaatatgttctcaagttagaaacatgaaaatgaagaacaatgtggtgatgt |
32006066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 15689362 - 15689326
Alignment:
| Q |
292 |
aatatgttctcatgttgaaacatgaaattgaagaaca |
328 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |
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| T |
15689362 |
aatatgttctcaagttgaaaaatgaaattgaagaaca |
15689326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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