View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3655_low_6 (Length: 301)
Name: NF3655_low_6
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3655_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2874241 - 2873951
Alignment:
| Q |
1 |
ctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874241 |
ctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacg |
2874142 |
T |
|
| Q |
101 |
gtgcatttcatctcctaccatggtatcagcacatatatccaaccccagtatctgcaatagaaaaattagaggtgaaaaatgaagtcttagaaacgtcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2874141 |
gtgcatttcatctcctaccatggtatcagcacatatatccaaccccaatatctgcaatagaaaaattagaggtgaaaaatgaagtgttagaaacgtcaaa |
2874042 |
T |
|
| Q |
201 |
attgaagactaatctaattttttcgatctttctctaatttttcgagagtaatttaacttttctagtataagagaactttataatagtattat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2874041 |
attgaagactaatctaattttttcgatctttctctaatttttcgagagtaatttaacttttctagtataagagaacttta-aatagtattat |
2873951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 2900731 - 2900875
Alignment:
| Q |
3 |
aagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggt |
102 |
Q |
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|
|||||||| ||||||||||||||||||| | | || | ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |
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| T |
2900731 |
aagccagtagatatttcatccatgaataaagcatttgctggtccaaccaacatttctcctgtggtaactcgctttctttgtcctccggagataccacgta |
2900830 |
T |
|
| Q |
103 |
gcatttcatctcctaccatggtatcagcacatatatccaacccca |
147 |
Q |
| |
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|||||||| || ||||| ||||||||||||| ||||||||||| |
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| T |
2900831 |
acatttcattccccaccatagtatcagcacatacatccaacccca |
2900875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 2884230 - 2884089
Alignment:
| Q |
6 |
ccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgca |
105 |
Q |
| |
|
||||| ||||||||||||||||||| | || | ||| || |||||||| ||||||||||||| || ||||||||| || ||||| |||||||| || |
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| T |
2884230 |
ccagtagatatttcatccatgaataatgcatttgctggcccgaccaacatctctcctgtggtaactcgctttctttgacctccggaaataccacgcaaca |
2884131 |
T |
|
| Q |
106 |
tttcatctcctaccatggtatcagcacatatatccaacccca |
147 |
Q |
| |
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|||||| || ||||| || |||||||||| |||||| |||| |
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|
| T |
2884130 |
tttcattccccaccatagtgtcagcacatacatccaatccca |
2884089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 44213466 - 44213582
Alignment:
| Q |
41 |
tggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatatatcc |
140 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||| |||||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||| |
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| T |
44213466 |
tggtccaaccaacatctctcctgtggtaacacgcttcctttgtcctccggagataccacgcaacatttcatcccctaccatggtatccgcacatatatcc |
44213565 |
T |
|
| Q |
141 |
aaccccagtatctgcaa |
157 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
44213566 |
aaccccaaaatctgcaa |
44213582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 44225627 - 44225733
Alignment:
| Q |
41 |
tggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatatatcc |
140 |
Q |
| |
|
||||||||||||||| |||||||| || | | ||| || ||||| || ||||||||||| |||||||||||| ||||||||||| || ||||||||| |
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| T |
44225627 |
tggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagataccacgtaacatttcatctcccaccatggtatccgcgcatatatcc |
44225726 |
T |
|
| Q |
141 |
aacccca |
147 |
Q |
| |
|
||||||| |
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|
| T |
44225727 |
aacccca |
44225733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 44236440 - 44236546
Alignment:
| Q |
41 |
tggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatatatcc |
140 |
Q |
| |
|
||||||||||||||| |||||||| || | | ||| || ||||| || ||||||||||| |||||||||||| ||||||||||| || ||||||||| |
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| T |
44236440 |
tggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagataccacgtaacatttcatctcccaccatggtatccgcgcatatatcc |
44236539 |
T |
|
| Q |
141 |
aacccca |
147 |
Q |
| |
|
||||||| |
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|
| T |
44236540 |
aacccca |
44236546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 39550855 - 39550904
Alignment:
| Q |
6 |
ccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat |
55 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
39550855 |
ccagtagatatttcatccatgaatagagctttcgccggtccaaccaacat |
39550904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 39567648 - 39567704
Alignment:
| Q |
6 |
ccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcct |
62 |
Q |
| |
|
||||| |||||||| |||||||||||| |||| | ||||||||||||||||||||| |
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|
| T |
39567648 |
ccagtagatatttcgtccatgaatagagctttagtgggtccaaccaacatttctcct |
39567704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 39334958 - 39334909
Alignment:
| Q |
6 |
ccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat |
55 |
Q |
| |
|
||||| ||||||||||||||||||| | |||| | ||||||||||||||| |
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|
| T |
39334958 |
ccagtagatatttcatccatgaataaagctttagttggtccaaccaacat |
39334909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 39346216 - 39346167
Alignment:
| Q |
6 |
ccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat |
55 |
Q |
| |
|
||||| ||||||||||||||||||| | |||| | ||||||||||||||| |
|
|
| T |
39346216 |
ccagtagatatttcatccatgaataaagctttagttggtccaaccaacat |
39346167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 39360767 - 39360711
Alignment:
| Q |
6 |
ccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcct |
62 |
Q |
| |
|
||||| ||||||||||||||||||| | |||| | |||||||||||||| |||||| |
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|
| T |
39360767 |
ccagtagatatttcatccatgaataaagctttagtcggtccaaccaacatctctcct |
39360711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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