View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3655_low_8 (Length: 241)
Name: NF3655_low_8
Description: NF3655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3655_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43729360 - 43729585
Alignment:
| Q |
1 |
cattttccattaacaaatagtaaaaatttgtaaattataggtactaatactaacctcatgaccattgcctgttgagtctctccgtacacctcttggtttt |
100 |
Q |
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| T |
43729360 |
cattttccattaacaaatagtaaaaatttgtaaattataggtactaatactaacctcatgaccattgcctgttgagtctctccgtacacctcttggtttt |
43729459 |
T |
|
| Q |
101 |
cttccaaatcttcttatggagcttgctctaagaaaatcttgttctgttgttcttctgattggaacagttcctttaggacattcttcaccagaatcaatcc |
200 |
Q |
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| T |
43729460 |
cttccaaatcttcttatggagcttgctctaagaaaatcttgttctgttgttcttctgattggaacagttcctttaggacattcttcaccagaatcaatcc |
43729559 |
T |
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| Q |
201 |
aaagctgaaagttatttgttgcattt |
226 |
Q |
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| T |
43729560 |
aaagctgaaagttatttgttgcattt |
43729585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 34760470 - 34760600
Alignment:
| Q |
71 |
gttgagtctctccgtacacctcttggttttcttccaaatcttcttatggagcttgctctaagaaaatcttgttctgttgttcttctgattggaacagttc |
170 |
Q |
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| T |
34760470 |
gttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttc |
34760569 |
T |
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| Q |
171 |
ctttaggacattcttcaccagaatcaatcca |
201 |
Q |
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| T |
34760570 |
cttctggacattcttcaccagaatcagtcca |
34760600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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