View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_high_13 (Length: 349)
Name: NF3656_high_13
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 40455258 - 40455588
Alignment:
| Q |
18 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatctgacgggaggtttaccacggttagaacgggttggaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40455258 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcatatctgacgggaggtttaccactgttagaacgggttggaag |
40455357 |
T |
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| Q |
118 |
atcatatttgacattagtagattcagtgttaggtgtgttggtggtatcatgcaaataaggattaatttcatttaaaa------------tagaatcaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40455358 |
atcatatttgacattagtagattcagtgttaggtgttttggtggtatcatgcaaataaggattaatttcatttaaaacagaatcaatttcagaatcaaaa |
40455457 |
T |
|
| Q |
206 |
acaagatcaacttcatctatacttgtattaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagctagttggt |
305 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40455458 |
acaagatcaacttcatctatacttgtatcaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagctagttggt |
40455557 |
T |
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| Q |
306 |
tatgatcaggagacgttgtattgtctaaagt |
336 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40455558 |
tatgatcaggagacgttgtattgtctaaagt |
40455588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 32202390 - 32202097
Alignment:
| Q |
18 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatctgacgggaggtttaccacggttagaacgggttggaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32202390 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcatatctgacgggaggtttaccacagttagaacgggttggaag |
32202291 |
T |
|
| Q |
118 |
atcatatttgacattagtagattcagtgttaggtgtgttggtggtatcatgcaaataaggattaatttcatttaaaa------------tagaatcaaaa |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32202290 |
atcatatttgacattagtagattcagtgttaggtgtgttggtggtatcatgcaaataaggattaatttcatttaaaacagaatcaatttcagaatcaaaa |
32202191 |
T |
|
| Q |
206 |
acaagatcaacttcatctatacttgtattaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagcta |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32202190 |
acaagatcaacttcatctatacttgtatcaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagcta |
32202097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 56391304 - 56391623
Alignment:
| Q |
18 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatctgacgggaggtttaccacggttagaacgggttggaag |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||| |||||| |||||||||| |||||| |
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| T |
56391304 |
tgtgagttgacacataattactaatgggatatttagctttggattgagggtctggttcatatctgacaggaggttgaccacgattagaacggggtggaag |
56391403 |
T |
|
| Q |
118 |
atcatatttgacattagtagattcagtgttaggtgtgttggtggtatcatgcaaataaggattaatttcatttaaaat---agaatcaaaaacaagatca |
214 |
Q |
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| ||||| ||| |||| || ||||||||| ||||| ||||||| ||||| ||| |||||||||||||| | | ||||| ||||| | ||||| |
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| T |
56391404 |
aatatattggacgatagtcgactcagtgttaagtgtgatggtggtctcatgtaaaccaggattaatttcatgatcagtttcagaattaaaaataggatca |
56391503 |
T |
|
| Q |
215 |
acttcatctatacttgtattaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagctagttggttatgatcag |
314 |
Q |
| |
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||||||||| || ||||||| | ||| ||||| ||||| |||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||| |
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| T |
56391504 |
acttcatctgtatgtgtattatcaaggataggataaagagatacctctgaagagtcatgttgaacctttggagaagattgagctagttggatatgatcag |
56391603 |
T |
|
| Q |
315 |
gagacgttgtattgtctaaa |
334 |
Q |
| |
|
|||| |||||| |||||| |
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| T |
56391604 |
aagacactgtattatctaaa |
56391623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 27515545 - 27515864
Alignment:
| Q |
18 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatctgacgggaggtttaccacggttagaacgggttggaag |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||| ||||||| |||||| |||||||||| |||||| |
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| T |
27515545 |
tgtgagttgacacataattactaatgggatatttagcttttgattgagggtctggttcatatctgacaggaggttgaccacgattagaacggggtggaag |
27515644 |
T |
|
| Q |
118 |
atcatatttgacattagtagattcagtgttaggtgtgttggtggtatcatgcaaataaggattaatttc---atttaaaatagaatcaaaaacaagatca |
214 |
Q |
| |
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| ||||| ||| |||| || ||||||||||||||| ||||||| ||||| ||| ||||| |||||| || || |||||| ||||||| ||||| |
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| T |
27515645 |
aatatattggacgatagtcgactcagtgttaggtgtgatggtggtctcatgtaaaccaggatcaatttcatgatctattttagaattaaaaacaggatca |
27515744 |
T |
|
| Q |
215 |
acttcatctatacttgtattaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagctagttggttatgatcag |
314 |
Q |
| |
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| ||||| | | ||||||| | ||| ||||| ||||| |||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||| |
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| T |
27515745 |
atttcatatgaatgtgtattatcaaggataggataaagagatacctctgaagagtcatgttgaacctttggagaagattgagctagttggatatgatcag |
27515844 |
T |
|
| Q |
315 |
gagacgttgtattgtctaaa |
334 |
Q |
| |
|
|||| ||||||| |||||| |
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| T |
27515845 |
aagacattgtattatctaaa |
27515864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 39744155 - 39743836
Alignment:
| Q |
18 |
tgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatctgacgggaggtttaccacggttagaacgggttggaag |
117 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||| |||||||||| ||| ||||||||||||||| ||||||| |||||| |||||||||| |||||| |
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|
| T |
39744155 |
tgtgagttgacacataattactaatgaggtatttagctttggattgagggtctggttcatatctgacaggaggttgaccacgattagaacggggtggaag |
39744056 |
T |
|
| Q |
118 |
atcatatttgacattagtagattcagtgttaggtgtgttggtggtatcatgcaaataaggattaatttcatttaaaat---agaatcaaaaacaagatca |
214 |
Q |
| |
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| ||||| ||| |||| || ||||||||||||||| ||||||| ||||| ||| || || |||||||| | | ||||| ||||||| ||||| |
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|
| T |
39744055 |
aatatattggacgatagtcgactcagtgttaggtgtgatggtggtctcatgtaaaccagaatcaatttcatgatcagtttcagaattaaaaacaggatca |
39743956 |
T |
|
| Q |
215 |
acttcatctatacttgtattaatagggagaggatcaagagttaccgttgaagagtcaagttgaatttgtggagaagattgagctagttggttatgatcag |
314 |
Q |
| |
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||||||||| || ||||||| | ||| ||||| ||||| |||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||| |
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|
| T |
39743955 |
acttcatctgtatgtgtattatcaaggataggataaagagatacctctgaagagtcatgttgaacctttggagaagattgagctagttggatatgatcag |
39743856 |
T |
|
| Q |
315 |
gagacgttgtattgtctaaa |
334 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
39743855 |
aagacactgtattatctaaa |
39743836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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