View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_high_14 (Length: 348)
Name: NF3656_high_14
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 2358079 - 2358314
Alignment:
| Q |
17 |
acaaaattaattaagtgtggtaaagtagatagatttatctcgtggaggggtaatactnnnnnnnnncaatgtgtaggtaaatacataattgaaatgtcct |
116 |
Q |
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| T |
2358079 |
acaaaattaattaagtgtggtaaagtagatagatttatctcgtggaggggtaatactaaaaaaaaacaatgtgtaggtaaatacataattgaaatgtcct |
2358178 |
T |
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| Q |
117 |
cgactactttgttcttttgatacttgtgtacgtacttgcaaaacgaattaatgctactctgtatatatctcatcacgtacactctcaaccatatttattt |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358179 |
cgactacttggttcttttgatacttgtgtacgtacttgcaaaacgaattaatgctactctgtatatatctcatcacgtacactctcaaccatatttattt |
2358278 |
T |
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| Q |
217 |
cttaatcaatggctatgtataatttcagaaggaaaa |
252 |
Q |
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| T |
2358279 |
cttaatcaatggctatgtataatttcagaaggaaaa |
2358314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 2358359 - 2358457
Alignment:
| Q |
249 |
aaaattagaatatattgctgttaagaactataatatatcattcatatctcaaacattatatgatataccaacaattaatattatagatattcttcgaca |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2358359 |
aaaattagaatatattgctgttaagaactataatatatcattcatatctaaaacattatatgatataccaacaattaatattatagattttctttgaca |
2358457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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