View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_high_2 (Length: 579)
Name: NF3656_high_2
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 21271736 - 21272033
Alignment:
| Q |
8 |
aacctgtgcaattgtccattaccgtgtagcatggttcgttagtgggtttcaaattcgtccttttccatgcctttattttttgtccctttctgttaactga |
107 |
Q |
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| T |
21271736 |
aacctgtgcaattgtccattaccgtgtagcatggttcgttagtgggtttcaaattcgtccttttccatgcctttattttttgtccctttctgttaactga |
21271835 |
T |
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| Q |
108 |
ttttcttcacctaccctttccaacttgccca---tttcttctttaattccacttcaaattcaaaatcaccccactgtaatcttattaggcttgactatta |
204 |
Q |
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| T |
21271836 |
ttttcttcacctaccctttccaacttggccaccatttcttctttaattccacttcaaattcaaaatcaccccactataatgttattaggcttgagtatta |
21271935 |
T |
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| Q |
205 |
cttggtacttagttattttagtcctttcatattacttggtactaaattattttagtccttaaatgtataaggttttgttattataatttctgaaaata |
302 |
Q |
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| T |
21271936 |
cttggtacttagttattttagtcctttcatattacttggtactaaattattttagtccttaaatgtataaggttttgttattataatgtctgaaaata |
21272033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 399 - 579
Target Start/End: Original strand, 21272148 - 21272328
Alignment:
| Q |
399 |
gacatttttccttattacaatttagtagtttgattgtgaagataaatttgtatggccataaagataaagttgtgtcctgcttagccccacataccattgc |
498 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21272148 |
gacagttttccttattacaatttagtagtttgattgtgaagataaatttgtatggccataaagataaagttgtgtcctgcttagccccacataccattgc |
21272247 |
T |
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| Q |
499 |
cgcctacgtgtttgtcagaggtcagatatgcaagaatccattaggcccgcagaaacttaggtccaagggtccaagtcatcc |
579 |
Q |
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| T |
21272248 |
cgtctacgagttcgtcacaggtcagatatgcaagaatccattaggcccgcagaaacttaggtccaagggtccaagtcatcc |
21272328 |
T |
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