View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_high_20 (Length: 249)
Name: NF3656_high_20
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 4877562 - 4877702
Alignment:
| Q |
1 |
gttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagctatggaaataaggatcggaacttgtttgtt |
100 |
Q |
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| T |
4877562 |
gttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagctatggaaataaggatcggaacttgtttgtt |
4877661 |
T |
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| Q |
101 |
cgcgga-ttgattgctagaggtctattagattacatgcttt |
140 |
Q |
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| T |
4877662 |
cgcggatttgattgctagaggtctattagattacatgcttt |
4877702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 4877690 - 4877753
Alignment:
| Q |
177 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatg |
240 |
Q |
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| T |
4877690 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatg |
4877753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
| Q |
114 |
ctagaggtctattagattacatgctttttggtttgctaattaaagaactat |
164 |
Q |
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| T |
670484 |
ctagaggtctattagattacatgctttccagttttctaattaaagaactat |
670434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
| Q |
125 |
ttagattacatgctttttg-gtttgctaattaaagaactatgctttt |
170 |
Q |
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| T |
28326870 |
ttagattacatgcttttttagtttgctaattaaaggactatgctttt |
28326916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
| Q |
92 |
ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt |
170 |
Q |
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| T |
47923090 |
ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt |
47923009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 9066862 - 9066898
Alignment:
| Q |
134 |
atgctttttggtttgctaattaaagaactatgctttt |
170 |
Q |
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| T |
9066862 |
atgctttttggtttgctaattgaaggactatgctttt |
9066898 |
T |
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