View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3656_high_21 (Length: 245)

Name: NF3656_high_21
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3656_high_21
NF3656_high_21
[»] chr4 (18 HSPs)
chr4 (14-198)||(26429188-26429372)
chr4 (10-202)||(48446601-48446793)
chr4 (22-202)||(26006077-26006257)
chr4 (14-198)||(35853118-35853302)
chr4 (23-198)||(2536975-2537150)
chr4 (23-202)||(33846276-33846455)
chr4 (23-202)||(52759119-52759298)
chr4 (14-202)||(25058296-25058484)
chr4 (23-198)||(8169321-8169495)
chr4 (23-202)||(12274148-12274327)
chr4 (23-198)||(17423818-17423993)
chr4 (29-202)||(54552579-54552752)
chr4 (22-196)||(22359239-22359412)
chr4 (21-202)||(9034864-9035032)
chr4 (23-195)||(19396165-19396337)
chr4 (14-202)||(791904-792070)
chr4 (65-175)||(23860011-23860121)
chr4 (113-190)||(6839751-6839828)
[»] scaffold0016 (1 HSPs)
scaffold0016 (14-202)||(187085-187273)
[»] chr8 (10 HSPs)
chr8 (14-202)||(25663464-25663652)
chr8 (14-198)||(5839724-5839908)
chr8 (36-196)||(11503067-11503227)
chr8 (46-196)||(32282841-32282991)
chr8 (14-198)||(32577996-32578194)
chr8 (36-202)||(36531117-36531283)
chr8 (14-201)||(14219789-14219976)
chr8 (46-186)||(10342353-10342497)
chr8 (58-202)||(40395242-40395384)
chr8 (137-182)||(31037712-31037757)
[»] chr7 (23 HSPs)
chr7 (14-202)||(23362248-23362436)
chr7 (14-190)||(25611367-25611543)
chr7 (22-202)||(9360709-9360889)
chr7 (14-198)||(14160423-14160607)
chr7 (21-202)||(3962286-3962467)
chr7 (23-202)||(8150847-8151026)
chr7 (14-198)||(4595026-4595210)
chr7 (14-198)||(30466627-30466813)
chr7 (24-202)||(9026533-9026708)
chr7 (23-202)||(42851933-42852115)
chr7 (14-163)||(28423910-28424059)
chr7 (23-202)||(40187326-40187506)
chr7 (46-202)||(5866208-5866364)
chr7 (80-198)||(6596171-6596289)
chr7 (29-202)||(2405146-2405318)
chr7 (21-202)||(21946916-21947084)
chr7 (50-196)||(35827562-35827708)
chr7 (23-132)||(24267784-24267893)
chr7 (23-120)||(33336091-33336188)
chr7 (124-202)||(12152753-12152832)
chr7 (37-93)||(12152671-12152727)
chr7 (52-182)||(49079074-49079204)
chr7 (166-202)||(19290388-19290424)
[»] chr6 (12 HSPs)
chr6 (14-198)||(32957397-32957581)
chr6 (22-202)||(7435608-7435788)
chr6 (36-202)||(7597541-7597707)
chr6 (48-202)||(7608471-7608625)
chr6 (51-193)||(6192539-6192681)
chr6 (23-202)||(13406086-13406265)
chr6 (81-192)||(34183123-34183234)
chr6 (117-202)||(12523652-12523737)
chr6 (22-101)||(12523578-12523657)
chr6 (9-196)||(31797974-31798161)
chr6 (116-190)||(29025240-29025314)
chr6 (36-92)||(32814075-32814131)
[»] chr2 (16 HSPs)
chr2 (22-203)||(45085976-45086157)
chr2 (23-198)||(24477472-24477647)
chr2 (14-202)||(23769767-23769955)
chr2 (23-185)||(10213786-10213948)
chr2 (21-198)||(22605884-22606061)
chr2 (22-202)||(38451685-38451864)
chr2 (23-202)||(23407741-23407920)
chr2 (85-198)||(11616661-11616774)
chr2 (26-202)||(1604827-1605002)
chr2 (76-197)||(31411362-31411483)
chr2 (21-158)||(40074066-40074201)
chr2 (14-195)||(27177683-27177864)
chr2 (71-202)||(32025536-32025666)
chr2 (153-202)||(20214301-20214350)
chr2 (162-202)||(1605079-1605119)
chr2 (102-186)||(28317799-28317883)
[»] scaffold0577 (1 HSPs)
scaffold0577 (14-202)||(2191-2379)
[»] chr5 (12 HSPs)
chr5 (14-198)||(9609498-9609682)
chr5 (14-202)||(30796790-30796978)
chr5 (14-202)||(29242100-29242288)
chr5 (22-192)||(1721938-1722108)
chr5 (53-202)||(39860924-39861073)
chr5 (78-202)||(36978727-36978854)
chr5 (117-202)||(4052904-4052989)
chr5 (23-101)||(4052831-4052909)
chr5 (139-198)||(16007128-16007187)
chr5 (22-78)||(27452586-27452642)
chr5 (160-198)||(40109288-40109326)
chr5 (162-198)||(27452479-27452515)
[»] chr3 (14 HSPs)
chr3 (14-198)||(55218642-55218826)
chr3 (23-202)||(43018347-43018526)
chr3 (14-212)||(8457856-8458054)
chr3 (14-198)||(51191868-51192052)
chr3 (22-198)||(51951903-51952079)
chr3 (25-198)||(39383422-39383595)
chr3 (14-174)||(39133617-39133777)
chr3 (14-201)||(13444077-13444265)
chr3 (23-202)||(21689707-21689884)
chr3 (10-202)||(26400131-26400323)
chr3 (76-202)||(7622657-7622782)
chr3 (165-198)||(39135493-39135526)
chr3 (26-91)||(42515701-42515766)
chr3 (142-182)||(19396844-19396884)
[»] scaffold0279 (1 HSPs)
scaffold0279 (25-202)||(6683-6860)
[»] chr1 (9 HSPs)
chr1 (53-198)||(48522162-48522307)
chr1 (117-202)||(25070818-25070903)
chr1 (23-202)||(19956504-19956680)
chr1 (62-202)||(26347349-26347489)
chr1 (23-92)||(25070907-25070976)
chr1 (14-182)||(11079900-11080068)
chr1 (129-202)||(15393495-15393568)
chr1 (40-85)||(15327478-15327523)
chr1 (48-101)||(31592302-31592355)
[»] scaffold0200 (1 HSPs)
scaffold0200 (22-202)||(26930-27110)
[»] scaffold0450 (1 HSPs)
scaffold0450 (22-195)||(5258-5431)
[»] scaffold0011 (1 HSPs)
scaffold0011 (25-208)||(58370-58553)
[»] scaffold0004 (1 HSPs)
scaffold0004 (23-169)||(216430-216576)
[»] scaffold0360 (1 HSPs)
scaffold0360 (107-190)||(5316-5399)
[»] scaffold0201 (2 HSPs)
scaffold0201 (128-198)||(20703-20773)
scaffold0201 (48-84)||(20650-20686)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 26429372 - 26429188
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26429372 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacaaagtcgctcatagctttgctagagtggctttgcg 26429273  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  26429272 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 26429188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 48446601 - 48446793
Alignment:
Q  10 gacggtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctt 109  Q
    |||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  48446601 gacggtagacgtctgttagcttcagatttagtaacctctgatgttaggtttattcggagacaagccaacgaagttgctcatagctttgctagagtgactt 48446700  T
Q  110 tgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||||||| |||||||||||| ||| | |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  48446701 tgcgtcatgctagtttccatattcatattatggttccatcttatatctctactattattatgaatgaaatacaataaatttcttcttgtaaaa 48446793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 26006257 - 26006077
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    ||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26006257 ctgttagcttctgatgtagtaacttctgatgttaggtttattcagagacaagccaacgaagtcgctcatagttttgcttgagtggctttgcgtcatgcta 26006158  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | |||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26006157 gtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtaaaa 26006077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 35853118 - 35853302
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| |||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35853118 gtagacttctgttagcttctgatttaataacctctgatgttaggttcattcggagacaagtcaacgaagtcgctcatagttttgctagagtggctttgcg 35853217  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||    
T  35853218 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaattaaatgcaataagtttcttcttgt 35853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 2537150 - 2536975
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||    
T  2537150 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtctcttataactttgctagagtgactttgcgtcatgctag 2537051  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
     |||||||||||| ||| ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||    
T  2537050 tttccatattcatgttaggattccatcttgtatctctactattattatgaataaaatgcaataagtttcttcttgt 2536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 33846276 - 33846455
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33846276 tgttagcttctgatttggtaacctctggtgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 33846375  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||  ||| ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||    
T  33846376 tttccatattcacattaggattccatcttgtatttctactattattctgaatgaaatgcaataagtttcttcttataaaa 33846455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 52759298 - 52759119
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  52759298 tgttagcttatgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgctcatagttttgttagagtggctttgtgtcatgctag 52759199  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||| ||| ||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  52759198 tttccatattcatattatgattccatcgtgtatctatactattattatgaatgaaatgcaataagtttcttcttgtaaaa 52759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 25058484 - 25058296
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |||||| |||    
T  25058484 gtagacgtctgttagcttctgatttagtaacatctgatgttaggtttatttggagacaagccaacgaagtcgctcatagttttgttagactggcttcgcg 25058385  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||| ||| |||||||||||| ||||||||| ||||| |||||| ||||||||||||||| ||||  | |||||||||||||||||||    
T  25058384 tcatgttagtttccatattcatattaagattcaatcttgtatctctactattattatgaataaaatatagtaagtttcttcttgtaaaa 25058296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 8169495 - 8169321
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  8169495 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctaggatggcttcgcgtcatgctag 8169396  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
     |||  ||||||| |||  |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8169395 tttcattattcatattagaattccaccttatatctctactattattatgaatg-aatgcaataagtttcttcttgt 8169321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 12274148 - 12274327
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  ||||| |||||| |||    
T  12274148 tgttagcttctgatttagtaacctctgatgttaggtttattcggagataagccaacgaagtcgctcttagctttgctagagtaactttgtgtcatgttag 12274247  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     ||| ||||| || ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  12274248 tttctatatttatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttttttcttgtaaaa 12274327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 17423993 - 17423818
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||| | ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||    
T  17423993 tgttagcttctgatttggcaacctatgatgttaggtttattcggagacaagccaacgaagttgctcatagctttgctagagtggcttcgagtcatgctag 17423894  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
     |||||||||||| ||| ||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||    
T  17423893 tttccatattcatattaggattccatcttgtatctctactattatcatgaatgaaattcaataagtttcttcttgt 17423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 54552579 - 54552752
Alignment:
Q  29 cttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttcca 128  Q
    |||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  54552579 cttctgatttagtaacctctgatgttaggtttattcggatacaagctaacgaagtcggtcatagctttgctagagtggctttgcgtcatgctagatttca 54552678  T
Q  129 tattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||| | | |||||| |||| |||||   |||||||||||||||||||||||||||||| || ||||||||    
T  54552679 tattcatatcaggattccttcttgtatctttgctattattatgaatgaaatgcaataagttttttgttgtaaaa 54552752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 22359412 - 22359239
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    ||||||||||||| ||||||||  ||||||||| | |||||||| | |||||||||||||||| ||||||| ||||||  |||||||||| |||||||||    
T  22359412 ctgttagcttctgatttagtaatctctgatgtttg-tttattcgaatacaagccaacgaagtcactcatagttttgctttagtggctttgtgtcatgcta 22359314  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 196  Q
    | |||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  22359313 gtttccatattcatattaagattccatcttgtatctctactattattatgaatgaaatgcaataagtttgttctt 22359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 9034864 - 9035032
Alignment:
Q  21 tctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 120  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||             ||||||||||||||||||    
T  9034864 tctgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcggtca-------------gtggctttgcgtcatgct 9034950  T
Q  121 agcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    || |||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  9034951 agtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttctcgtaaaa 9035032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 19396337 - 19396165
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||  |||||||| |||| |||||||  ||||||||||||||| ||||    
T  19396337 tgttagcttctgatttagtaacctttgatgttaggtttattcggagacaagccaataaagtcgcttatagttttgctatggtggctttgcgtcatactag 19396238  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 195  Q
     || || |||||| ||||||||  ||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  19396237 ttttcacattcatattaagattgtatcttgtatctctactattattatgaatgaaatgcaataagttttttct 19396165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 791904 - 792070
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||  ||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||                   
T  791904 gtagacgtctgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaacgaagttgctcatagttttgc--------------- 791988  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
          ||| |||||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  791989 ------tagtttccatattcatattaggattccatcttatatctctac-attattatgaatgaaatgcaataaatttcttcttgtaaaa 792070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 23860121 - 23860011
Alignment:
Q  65 ggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactat 164  Q
    ||||| ||| ||||||| |||||||||||||| ||||||||  ||||| ||||  ||  || ||||||||| ||| |||| |||||  |||||| ||||     
T  23860121 ggagataagtcaacgaaatcgctcatagctttactagagtgattttgcatcataataattttcatattcatattacgatttcatctcgtatctctactac 23860022  T
Q  165 tattatgaatg 175  Q
    ||| |||||||    
T  23860021 tataatgaatg 23860011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 6839828 - 6839751
Alignment:
Q  113 gtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 190  Q
    |||||||||| ||||| |||  | |||  |||||||||| |||||| || |||||||||||| ||||||| |||||||    
T  6839828 gtcatgctagtttccacatttttattagaattccatcttttatctctacgattattatgaataaaatgcactaagttt 6839751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 187085 - 187273
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  187085 gtagacgtctgttagcttctgatttagtaacctctaatgttaggttcattcggagacaagccaacgaattcgctcatagctttgctatagtggctttgcg 187184  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  187185 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgtaaaa 187273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 25663464 - 25663652
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25663464 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggatttgcg 25663563  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||  |||||||||||| ||| ||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  25663564 tcatgctattttccatattcatattaggattccatcttgtatctctcctattattttgaatgaaatgcaataagtttcttcttgtaaaa 25663652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 5839724 - 5839908
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5839724 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcatttggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 5839823  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| ||||||||| || |||  ||| |||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  5839824 tcatgctagtttccatattaatattagaatttcatcttgtatctctactattatcatgaatgaaatgcaataagtttcttcttgt 5839908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 11503227 - 11503067
Alignment:
Q  36 tttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcat 135  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  11503227 tttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgcgtcatgctagtttccatattcat 11503128  T
Q  136 tttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 196  Q
     ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  11503127 attaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttcttctt 11503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 32282991 - 32282841
Alignment:
Q  46 tctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattc 145  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||    
T  32282991 tctgatgttaggtttattcggagacaaaccaacgaagtcgctcatagctttgctagagtgactttgcatcatgctagtttccatattcatattaggattc 32282892  T
Q  146 catcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 196  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  32282891 catcttgtatctctactattattatgaatgaaatgcaataagtttcttctt 32282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 32577996 - 32578194
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagag---------- 103  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||              
T  32577996 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagttgctcatagctttgctagagtggctttgct 32578095  T
Q  104 ----tggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
        ||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||    
T  32578096 agaatggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttattcttgt 32578194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 36531117 - 36531283
Alignment:
Q  36 tttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcat 135  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| | | |||| |||||||||  ||||||||||||    
T  36531117 tttagaaacctctgatgttaggtttattcggagacaagcaaacgaagtcgcttatagttttgctagaatagttttgtgtcatgctaatttccatattcat 36531216  T
Q  136 tttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     ||| ||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||||    
T  36531217 attaggattccatcttgtttctctactattattatgaatgaaatgcaataaatctcttcttgtaaaa 36531283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 14219976 - 14219789
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||| ||||| |||||| |||||  || || |||||| ||  | |    
T  14219976 gtagacgtctgttagcttttgatttagtaatatctgatgttaggtttattaggagacaaaccaacaaagtcggtcataatttcgccagagtgactccgtg 14219877  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaa 201  Q
    ||||| ||| |||||||||||| |||||||| || |||| || || ||||||||| | |||||||| |||||| ||||||||||||||    
T  14219876 tcatgttagtttccatattcatattaagatttcagcttacatttctactattattttaaatgaaatacaataaatttcttcttgtaaa 14219789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 10342353 - 10342497
Alignment:
Q  46 tctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattca---ttttaaga 142  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||||||||| | |||||||| |||||||||| || ||||||||   | ||| ||    
T  10342353 tctgatgttaggtttatttggagacaaaccaacgaaatcgctcatagctttgctaaaatggctttgtgtcatgctagttttcatattcatattattagga 10342452  T
Q  143 ttccatcttatatctcaactattatt-atgaatgaaatgcaataa 186  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  10342453 ttccatcttatatctctactattattaatgaatgaaatacaataa 10342497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 40395242 - 40395384
Alignment:
Q  58 tttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatct 157  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||| |||  |||  ||||| |||||    
T  40395242 tttattcggagacaagtcaactaagtcactcatagctttgctagagtggattcgcgtcatgttagtttccatattcatattagaattttatcttgtatct 40395341  T
Q  158 caactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | ||||||||  |||||||||| |||||| ||||||||| |||||    
T  40395342 ctactattat--tgaatgaaatacaataaatttcttcttataaaa 40395384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 31037757 - 31037712
Alignment:
Q  137 ttaagattccatcttatatctcaactattattatgaatgaaatgca 182  Q
    |||| |||||||||| |||||| ||||||||| |||||||||||||    
T  31037757 ttaaaattccatcttgtatctctactattattttgaatgaaatgca 31037712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 23362248 - 23362436
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23362248 gtagacgtctgttagcttctgatttagtaacctctgatgtaaggttcattcggagacaagccaacaaagtcgctcatagctttgctagagtggctttgcg 23362347  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  23362348 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataaatttcttcttgtaaaa 23362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 25611543 - 25611367
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25611543 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 25611444  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 190  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  25611443 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 25611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 9360709 - 9360889
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  9360709 ctgttagcttctgttttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgatcatagttttgctagagtagttttgcgtcatgcta 9360808  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | |||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9360809 gtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatacaataagtttcttcttgtaaaa 9360889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 14160423 - 14160607
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14160423 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 14160522  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| || | ||||||| ||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  14160523 tcatgctagtttgcgtattcatattaggattccttcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 14160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 3962467 - 3962286
Alignment:
Q  21 tctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 120  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3962467 tctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagttgctcatagctttgctagagtggctttgcgtcatgct 3962368  T
Q  121 agcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    || |||||||||| | ||| ||||||||||| |||||| ||||||||| |||||||||||||||||| |||||||| |||||    
T  3962367 agtttccatattcgtattaggattccatcttgtatctctactattattttgaatgaaatgcaataagcttcttcttataaaa 3962286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 8151026 - 8150847
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  8151026 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagcaaacgaagtcgctcatagttttgctagcgtgactttgcgtcatactag 8150927  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     ||||| |||||| ||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  8150926 tttccaaattcatattaggattccatcttgtatctctactattattatgaatgaaatgtaataagtttcttcttgtaaaa 8150847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 4595210 - 4595026
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||  |    
T  4595210 gtagacgtctgttagcttctgatttagtaacctctgatgttaggtttgttcggagacaaaccaacgaagtcgctcatagttttgctagagtggttttctg 4595111  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| |||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  4595110 tcatgctagtttccatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataagtttattcttgt 4595026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 30466627 - 30466813
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| | ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30466627 gtagacgtctgttagcttctgatatagtaacctctgaagttaggttcattcggagacaagccaacgaagtcgctcatagttttgctagagtggctttgcg 30466726  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactatta--ttatgaatgaaatgcaataagtttcttcttgt 198  Q
    | ||||||| |||||||||||| ||| ||||||||||| |||||| |||||||  || |||||||||||||||||||||||| ||||    
T  30466727 ttatgctagtttccatattcatattaggattccatcttgtatctctactattattttttgaatgaaatgcaataagtttctttttgt 30466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 9026533 - 9026708
Alignment:
Q  24 gttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagc 123  Q
    ||||||||||| ||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||      
T  9026533 gttagcttctgatttagtaacttatgatgttaggtttattcagagacaagtcaacgaagtcgctcatagttttgctagagtggatttgcgtcatgctaat 9026632  T
Q  124 ttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||||||||| ||||||||||||||| |||||   |||||||||||||||||||| ||||||||||||||| |||||    
T  9026633 ttccatattcatattaagattccatcttgtatct---ctattattatgaatgaaatgaaataagtttcttcttataaaa 9026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 42851933 - 42852115
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||||||||||| |||    
T  42851933 tgttagcttctgacttagtaacctctgatgttaggtttattcggagacaatccaacgaagtcgctcatagttttgctaacgtggctttgcgtcatgttag 42852032  T
Q  123 cttccatattcattttaagattccatcttatatctc---aactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||| ||| ||||||||||||||||||    | ||||||||||||||||||| |||||||||||||||||||||    
T  42852033 tttccatattcatattaggattccatcttatatctctattattattattatgaatgaaatggaataagtttcttcttgtaaaa 42852115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 28424059 - 28423910
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  28424059 gtagacttctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgca 28423960  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaacta 163  Q
    ||||||||| |||||||||||| | |  |||||||||| |||||||||||    
T  28423959 tcatgctagtttccatattcatatcagaattccatcttgtatctcaacta 28423910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 40187326 - 40187506
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagcttt-gctagagtggctttgcgtcatgcta 121  Q
    ||||| |||||| ||||||||| | |||||||||||||||| |||||||||||||||||  | ||||||| ||| | |||||||| |||||||| |||||    
T  40187326 tgttaacttctgatttagtaacctttgatgttaggtttatttggagacaagccaacgaaaacactcatagtttttgttagagtggttttgcgtcttgcta 40187425  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | || ||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40187426 gttttcatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtaaaa 40187506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 5866208 - 5866364
Alignment:
Q  46 tctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattc 145  Q
    ||||||||||||||||||||||||||||| ||| || | |||||||||||| |||||||||||| | |||||| ||  |||||||||||| ||| ||||     
T  5866208 tctgatgttaggtttattcggagacaagcaaacaaaattgctcatagctttcctagagtggcttcgtgtcatgttaatttccatattcatattaggattt 5866307  T
Q  146 catcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  5866308 catcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgtaaaa 5866364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 6596171 - 6596289
Alignment:
Q  80 aagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaat 179  Q
    ||||| ||||||| |||| |||||||| ||||||||||||||| |||||||||||| ||| ||||||||||| ||| || ||||||||| ||||||||||    
T  6596171 aagtcactcatagttttgttagagtggttttgcgtcatgctagtttccatattcatattaggattccatcttgtatatctactattattttgaatgaaat 6596270  T
Q  180 gcaataagtttcttcttgt 198  Q
    |||||||||||||||||||    
T  6596271 gcaataagtttcttcttgt 6596289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 2405146 - 2405318
Alignment:
Q  29 cttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttcca 128  Q
    |||||| ||||||||| | |||||||||| ||||| ||||||| | ||||||||||  | || | || ||| |||||||| || |||||||||| || |     
T  2405146 cttctgatttagtaacct-tgatgttagggttattaggagacatgtcaacgaagtcatttattgtttcgctcgagtggctctgtgtcatgctagttttcg 2405244  T
Q  129 tattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||| || ||||||||||||||||||||||   ||||||||| |||||||| |||||||||| |||||||||||    
T  2405245 tatttatattaagattccatcttatatctctcatattattataaatgaaatacaataagttttttcttgtaaaa 2405318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 21947084 - 21946916
Alignment:
Q  21 tctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 120  Q
    |||||||||||||| ||||||||| ||| |      |||||||||||||||||||||| ||||||||||||| ||||||||  || |||||| ||||| |    
T  21947084 tctgttagcttctgatttagtaacctctaa------gtttattcggagacaagccaacaaagtcgctcatagttttgctaggatgactttgcatcatgtt 21946991  T
Q  121 agcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    || |||||||      |||||||  |||||| ||| || ||||||||||| ||||||||| |||||||||||||||||||||    
T  21946990 ag-ttccata------ttaagatctcatcttgtatatctactattattataaatgaaatggaataagtttcttcttgtaaaa 21946916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 35827562 - 35827708
Alignment:
Q  50 atgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatc 149  Q
    ||||||||||||||| |||||||||| || |||| |||||||||||||||||| ||| ||   |||||||||  |||||||||||| |||||||| ||||    
T  35827562 atgttaggtttattctgagacaagcctacaaagttgctcatagctttgctagaatggattcatgtcatgctaatttccatattcatattaagatttcatc 35827661  T
Q  150 ttatatctcaactattattatgaatgaaatgcaataagtttcttctt 196  Q
    || ||||||   |  |||||| ||| ||||||||||| |||||||||    
T  35827662 ttgtatctctctttatattataaataaaatgcaataaatttcttctt 35827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 24267893 - 24267784
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||| ||||| ||||||||| ||| ||||||||||||||| |||||||| ||| |||||||||||||| ||||||||  || |||||||||||| |||    
T  24267893 tgttagtttctgatttagtaacctctaatgttaggtttattcagagacaagtcaatgaagtcgctcatagttttgctaggatgactttgcgtcatgttag 24267794  T
Q  123 cttccatatt 132  Q
     |||||||||    
T  24267793 tttccatatt 24267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 33336188 - 33336091
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 120  Q
    |||||||||||| ||||| ||| |||  | |||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||| ||||||||||    
T  33336188 tgttagcttctgatttagcaacctctagtattaggtttattcagagacaagccaacgaagttgctcataagtttgctagggtggcttcgcgtcatgct 33336091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 12152753 - 12152832
Alignment:
Q  124 ttccatattcat-tttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||| || |||||||||||||| |||||||| ||||||||| | ||||||||||||||| |||| ||||||||||    
T  12152753 ttccatattgatatttaagattccatcgtatatctctactattattttaaatgaaatgcaataaatttcatcttgtaaaa 12152832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 12152671 - 12152727
Alignment:
Q  37 ttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagc 93  Q
    ||||||||||||| |||||||||||||||||| ||| | ||| ||||||||||||||    
T  12152671 ttagtaacatctgctgttaggtttattcggaggcaaacaaacaaagtcgctcatagc 12152727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 49079074 - 49079204
Alignment:
Q  52 gttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatctt 151  Q
    |||||||||||| |||||||| ||||| |||||||| |||| || || ||| ||||| |  |||||| ||| || || |||||| |||| |||||||| |    
T  49079074 gttaggtttatttggagacaaaccaacaaagtcgcttatagattagcaagaatggctctttgtcatgttagttttcacattcatattaaaattccatcat 49079173  T
Q  152 atatctcaactattattatgaatgaaatgca 182  Q
     |||||| | | |||||||  ||||||||||    
T  49079174 gtatctctattcttattatagatgaaatgca 49079204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 19290424 - 19290388
Alignment:
Q  166 attatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19290424 attatgaatgaaatgcaataagttttttcttgtaaaa 19290388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 32957397 - 32957581
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32957397 gtagacgtctattagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 32957496  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||    
T  32957497 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcgataagtttcttcttgt 32957581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 7435788 - 7435608
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  7435788 ctgttaacttctgatttagtaacctctgatgttaggtttattcggagacaagtcaacgaagtcgctaatagctttgctagagtggctttgcgtcatgcta 7435689  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | |||||||||||| ||| ||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  7435688 gtttccatattcatattaggattccatcttgtatctctactattattatgaacgaaatgcaataaatttcttcttgtaaaa 7435608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 7597541 - 7597707
Alignment:
Q  36 tttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcat 135  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  7597541 tttagtaacctctgatgttaggtttattcggagacaagccaccaaagtcgctcatagctttgctagagtggctttgcgtgatgctagttttcatattcat 7597640  T
Q  136 tttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     ||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||    
T  7597641 attaggattccatcttatatctctactcttattatgaatgaaaagcaataaatttcttcttgtaaaa 7597707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 7608471 - 7608625
Alignment:
Q  48 tgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattcca 147  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||    
T  7608471 tgatgttaggtttattcgaagacaagccaacgaagtcactcatagctttgctatagtggctttgcgtcatgctagtttccatattcatattataattcca 7608570  T
Q  148 tcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7608571 tcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgtaaaa 7608625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 6192539 - 6192681
Alignment:
Q  51 tgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatct 150  Q
    ||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||| | ||| ||||||| |||||||||||| ||| ||||||||||    
T  6192539 tgttaggttcattcggagacaagccaacgaaatcactcatatctttgctagagtggctctacgttatgctagtttccatattcatattaggattccatct 6192638  T
Q  151 tatatctcaactattattatgaatgaaatgcaataagtttctt 193  Q
    | ||| || |||||||| |||||||||||||||||||||||||    
T  6192639 tgtatttctactattatcatgaatgaaatgcaataagtttctt 6192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 13406086 - 13406265
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||  ||||| ||||||| ||||||||  || ||| | ||||||||||    
T  13406086 tgttagcttctgatttagcaacctctgatgttatgtttattcggagacaagccaattaagtcactcatagttttgctaggatgacttcgagtcatgctag 13406185  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     ||||||| |||| ||||||||| ||| | |||||| ||| ||||| | |||||||| ||||||| ||||||||||||||    
T  13406186 tttccataatcatattaagattcgatcgtgtatctctactcttattttaaatgaaatacaataagcttcttcttgtaaaa 13406265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 34183234 - 34183123
Alignment:
Q  81 agtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatg 180  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||| || ||  |||| |||||| |||||| |||| |||||||||| |||||    
T  34183234 agtcgctcatagctttgctagagtggctttgcgtcatgttagttttcatatttatattgggatttcatcttgtatctctactactattatgaattaaatg 34183135  T
Q  181 caataagtttct 192  Q
    ||||||||||||    
T  34183134 caataagtttct 34183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 12523652 - 12523737
Alignment:
Q  117 tgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||| |||||||||||| ||| |||| |||||| |||||| || |||||||||||||||||||||||| |||||||||||||||    
T  12523652 tgctagtttccatattcatattaggatttcatcttgtatctctaccattattatgaatgaaatgcaataaatttcttcttgtaaaa 12523737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 12523578 - 12523657
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctag 101  Q
    ||||||||||||  ||||  || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  12523578 ctgttagcttctaatttaacaaaatctgatgttaggtttattcggagacaagccaacgaagttgctcatagttttgctag 12523657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 31798161 - 31797974
Alignment:
Q  9 agacggtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggct 108  Q
    |||| |||||||| ||||||||| || | ||||||| |||||||||||||||||| | |||||||| ||||||||  ||||||  |||||||    ||||    
T  31798161 agactgtagacatatgttagcttttgatctagtaacctctgatgttaggtttatttgaagacaagctaacgaagttactcataaatttgctatgacggct 31798062  T
Q  109 ttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 196  Q
    |  | |||| |||| || |||||  || ||| |||| |||||| ||||||  |||||||||||||| ||||||||||| ||| |||||    
T  31798061 tcacatcattctagttttcatatctatattaggatttcatcttgtatctctgctattattatgaataaaatgcaataaatttattctt 31797974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 29025314 - 29025240
Alignment:
Q  116 atgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 190  Q
    ||||||| |||||||||| | |||||||| |||||| |||| | |||||||||||||||||||||||||||||||    
T  29025314 atgctaggttccatattcgtattaagatttcatcttgtatcactactattattatgaatgaaatgcaataagttt 29025240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 32814075 - 32814131
Alignment:
Q  36 tttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatag 92  Q
    ||||||||  |||||||||||||||||||| |||||||| ||  |||||||| ||||    
T  32814075 tttagtaatctctgatgttaggtttattcgaagacaagctaataaagtcgcttatag 32814131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 45086157 - 45085976
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||    
T  45086157 ctgttagcttatgatttagtaacctctgatgttaggtttattcggagacaagccaacaaagtcgctcatagcttggctagagtggcttcgcgtcatgcta 45086058  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaac 203  Q
    | |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  45086057 gtttccatattcatattaggattccatcttatatctctactattattatgaatgaaatgaaataagtttcttcttgttaaac 45085976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 24477647 - 24477472
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  24477647 tgttagcttctgatttagtaacctctgatgttaggtttattcggagataaaccaacgaagtcgctcatagttttgctagagtggctttgcgttatgctag 24477548  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
     || ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  24477547 ttttcatattcatattaggattccatcttatatctctactattatgatgaatgaaatgcaataagtttcttcttgt 24477472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 23769955 - 23769767
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  23769955 gtagacgtctgttagcttcagaattagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtagctttgtt 23769856  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||| |||||||||||| |||  |||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23769855 acatgctagtttccatattcatattagaattctatcttgtatctctactattattatgaatgaaatgcaataagtttgttcttgtaaaa 23769767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 10213786 - 10213948
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  10213786 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaaaccaacgaagtcgctcatagttttgctagggtggcttcgcgtcatgctag 10213885  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaata 185  Q
     |||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  10213886 tttccatattcatattaagatttcatcttgtatctctactattattatgaatgaaatgcaata 10213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 22605884 - 22606061
Alignment:
Q  21 tctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 120  Q
    |||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  22605884 tctgttagcttctgatttagtaacctctgatgttaggttcaatcagagacaagccaacggagtcgctcatagctttgcgagagtggttttgcgtcatgct 22605983  T
Q  121 agcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    || || ||||||||| ||| ||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||    
T  22605984 agttttcatattcatattaggattccatcttgtatctctacaattattatgaatgaaatgcaatcagtttcttcttgt 22606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 38451864 - 38451685
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    ||||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  38451864 ctgttagcttctgatttattaacctctaatgttaggttttttcggagacaagccaacgaaatcgctcatagctttgctagagtggctttgcaccatgcta 38451765  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | |||||||||||| |||  ||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  38451764 gtttccatattcatattagaatttcatcttgtatct-tactattattatgaatgaaatgcaataagtttcttcttgtaaaa 38451685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 23407920 - 23407741
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| |||| |||  || ||| || |||||||||    
T  23407920 tgttagcttctgatttagtaacctctaatgttaggtttattcggagacaagcaaacaaagtcgctcatagttttgttaggatgtcttcgcatcatgctag 23407821  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  23407820 tttccatattcatattaagattccatcttatatctctactattattatgaacgaaatgcaataaatttcttcttgtaaaa 23407741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 11616661 - 11616774
Alignment:
Q  85 gctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaat 184  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||| ||||| ||||| |||||| ||||||||| |||||||||||||||    
T  11616661 gctcatagctttgctagagtgactttacgtcatgctagtttccatattcatattaggattctatcttgtatctctactattattttgaatgaaatgcaat 11616760  T
Q  185 aagtttcttcttgt 198  Q
    ||||||||||||||    
T  11616761 aagtttcttcttgt 11616774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 1604827 - 1605002
Alignment:
Q  26 tagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagctt 125  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||  |||| |||||| |||||| || |||||||||| || | |||||| ||| ||    
T  1604827 tagcttctgatttagtaacatctgatattaggtttattaggagacaaatcaacaaagtcgttcatagtttcgctagagtggattagtgtcatgttagttt 1604926  T
Q  126 ccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     | ||||||| || |||||||||||| ||| ||   ||||||||| ||||||| |||||||||||||||||||||||    
T  1604927 tcgtattcatatt-agattccatcttttatatctcttattattataaatgaaacgcaataagtttcttcttgtaaaa 1605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 31411483 - 31411362
Alignment:
Q  76 aacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatg 175  Q
    |||||||||| ||||||||||||||||||| ||||| ||||| |||| |||||||||||| ||| |||| |||||| ||| || | ||||||||||||||    
T  31411483 aacgaagtcgttcatagctttgctagagtgactttgtgtcattctagtttccatattcatattaggatttcatcttgtatatctattattattatgaatg 31411384  T
Q  176 aaatgcaataagtttcttcttg 197  Q
    |||| |||||||||||||||||    
T  31411383 aaatacaataagtttcttcttg 31411362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 40074201 - 40074066
Alignment:
Q  21 tctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 120  Q
    |||||| ||||||| ||||| ||| ||| |||||||||||||| | |||||||||||| ||||||||||||| ||||||| | |||||| ||||||||||    
T  40074201 tctgtttgcttctgatttagcaacctctaatgttaggtttattag-agacaagccaacaaagtcgctcatagttttgctaaa-tggcttcgcgtcatgct 40074104  T
Q  121 agcttccatattcattttaagattccatcttatatctc 158  Q
    || || ||||||||| ||||||||||||||| ||||||    
T  40074103 agttttcatattcatattaagattccatcttgtatctc 40074066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 27177683 - 27177864
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| ||| ||||||  || ||||||||| | |||||| |||||||||  |||||||||||||||||| |||||||| ||  ||||   ||||||| |    
T  27177683 gtagacgtctattagctcttgatttagtaacctttgatgtcaggtttattatgagacaagccaacgaagtagctcatagtttcactaggacggctttgtg 27177782  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 195  Q
    |||| || | |||||||||||| |||||||||| |  | |||||| ||||||||| | | |||||| |||||||||||||||    
T  27177783 tcattcttgtttccatattcatattaagattccgttgtgtatctctactattattttaattgaaatacaataagtttcttct 27177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 32025536 - 32025666
Alignment:
Q  71 aagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattat 170  Q
    ||||||| ||||| ||||||||||||||||||||| |||   |||||||||| ||||||||| || |||  ||| ||| ||||||||| || ||||||||    
T  32025536 aagccaatgaagttgctcatagctttgctagagtgacttcatgtcatgctagtttccatatttatattagaatttcatgttatatctctacaattattat 32025635  T
Q  171 gaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     ||| ||| || ||||||||||||||||||||    
T  32025636 -aataaaacgctataagtttcttcttgtaaaa 32025666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 20214301 - 20214350
Alignment:
Q  153 tatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  20214301 tatctctactattattttgaatgaaatgcaataagtttcttcttgtaaaa 20214350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 1605079 - 1605119
Alignment:
Q  162 tattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  1605079 tattattataaataaaatgcaataagtttcttcttgtaaaa 1605119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 28317799 - 28317883
Alignment:
Q  102 agtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataa 186  Q
    ||||| |||| |||||| ||  || |||||| || |||||||| ||||||||||||| ||||||||| | ||| |||||||||||    
T  28317799 agtggttttgtgtcatgataattttcatatttatattaagatttcatcttatatctctactattattttaaataaaatgcaataa 28317883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 2379 - 2191
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  2379 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcgcagacaagccaacgaagtcgctcatagctttgctagagtgactttgcg 2280  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||| |||||||||||| ||| ||||| ||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  2279 tcatgctagtttccatattcatattaggattctatcttgtatctctactattattatgaatgaaatgcaagaagtttattcttgtaaaa 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 9609682 - 9609498
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  9609682 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgca 9609583  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||    
T  9609582 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgtatgaaatgcaataagtttcttcttgt 9609498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 30796978 - 30796790
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| ||| ||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30796978 gtagacgtctattagcttatgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 30796879  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    || |||||| |||||||||||| ||| |||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  30796878 tcttgctagtttccatattcatattaggattccatcttgcatctctactattattttgaatgaaatgcaataagtttcttcttgtaaaa 30796790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 29242288 - 29242100
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| ||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  29242288 gtagacgtctgttagcttctgacttagtaacctctgatgttaggttcattcggagacaagccaatgaagtcgctcatagctttgctagagtggctttaca 29242189  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||| ||||||||| || ||| |||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  29242188 tcatgctagtttccatatttatattaggattccatattgtatctctactattattttgaatgaaatgcaataagtttcttcttgtaaaa 29242100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 1721938 - 1722108
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    |||||| ||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  1721938 ctgttaacttatgatttagtaacctctgatgttaggtttatttggagacaagccaacgaagtcgctcatagtttggctagagtggcttcgcgtcatgcta 1722037  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttct 192  Q
    | |||||||||||| |||| ||| |||||| |||||| | |||||||||||| ||||||||||||||||||    
T  1722038 gtttccatattcatattaaaatttcatcttgtatctctattattattatgaaagaaatgcaataagtttct 1722108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 39860924 - 39861073
Alignment:
Q  53 ttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatctta 152  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||| |||||||||||| |||||||||||| ||| ||||| |||||     
T  39860924 ttaggtttattcggagacaagccaaggaagtcgctcataattttgctagggtggcttcgcgtcatgctagtttccatattcatattatgattcaatcttg 39861023  T
Q  153 tatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  39861024 tatctctactattattatgaaagaaatgcaataagttttttcttgtaaaa 39861073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 36978727 - 36978854
Alignment:
Q  78 cgaagtcgctcatagctttgctag---agtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaat 174  Q
    |||||||||||||||||||| ||    ||||| || |||||||||||| || |||||| || ||| ||||||||||| |||||| |||||||||||||||    
T  36978727 cgaagtcgctcatagctttgttaattaagtggtttcgcgtcatgctagttttcatatttatattaggattccatcttgtatctctactattattatgaat 36978826  T
Q  175 gaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||||||||||||||||||||||    
T  36978827 gaaatgcaataagtttcttcttgtaaaa 36978854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 4052904 - 4052989
Alignment:
Q  117 tgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||| |||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||    
T  4052904 tgctagtttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgtaaaa 4052989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 4052831 - 4052909
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctag 101  Q
    |||||||||||  ||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  4052831 tgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaacgaagttgctcatagttttgctag 4052909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 16007187 - 16007128
Alignment:
Q  139 aagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16007187 aagatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 16007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 27452642 - 27452586
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaac 78  Q
    |||||||||| || ||||||||| |||||||||||||||||||||||| ||||||||    
T  27452642 ctgttagcttatgatttagtaacctctgatgttaggtttattcggagataagccaac 27452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 40109288 - 40109326
Alignment:
Q  160 actattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  40109288 actattattatgaatgaaatgcaataaatttcttcttgt 40109326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 27452515 - 27452479
Alignment:
Q  162 tattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||||||||||||||||||| |||||||||||    
T  27452515 tattattatgaatgaaatgcaataaatttcttcttgt 27452479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 55218826 - 55218642
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55218826 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 55218727  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| ||||||||||| || ||| |||||||| || |||||||||||||||||||||| ||||    
T  55218726 tcatgctagtttccatattcatattaggattccatcttgtacctctactattatcataaatgaaatgcaataagtttctttttgt 55218642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 43018526 - 43018347
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||| |||||||||||||||    
T  43018526 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacaaagttgctcatagttttgctatagtggttttgcgtcatgctag 43018427  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  43018426 tttccatattcatattatgattccatcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgtaaaa 43018347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 8457856 - 8458054
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    ||||||| |||||||||| || ||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| | ||||||||||    
T  8457856 gtagacacctgttagcttttgatttagtaacctctgatgttaggtttattcgaagacaagccaatgaagtcgcttatagctttgctataatggctttgcg 8457955  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaaccaaaaaagt 212  Q
    ||||||||| || ||||||||| ||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8457956 tcatgctagttttcatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtaaaaaaaaaaaagt 8458054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 51192052 - 51191868
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| ||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||    
T  51192052 gtagacgtctgttagcttatgatttagtaacctctgatgttaggtttattcagagacaagccaacgaagtcgttcatagctttgctagattgactttgcg 51191953  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||| |||||||||||| ||| |||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  51191952 tcatgctagtttccatattcatattatgatttcatcttgtatctgtactattattatgaatgaaatgcaataagtttcttcttgt 51191868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 51951903 - 51952079
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  51951903 ctgttagcttctgatttagtaacctctgatgttaggtttattcgaagacaagccaatgaattcgctcatagttttgctagagtggctttacgtcatgcta 51952002  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    | || ||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  51952003 gttttcatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttctttttgt 51952079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 39383422 - 39383595
Alignment:
Q  25 ttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagct 124  Q
    |||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| ||  |    
T  39383422 ttagcttctaatttaataacctctgatgttaggtttattcggagacaagtcaacgaagtcgttcatagctttgctcgagtggttttgcgtcatgttaatt 39383521  T
Q  125 tccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    ||||||||||| ||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  39383522 tccatattcatattatgattccattttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 39383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 39133617 - 39133777
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| | |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39133617 gtagacgtttgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtgactttgcg 39133716  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaat 174  Q
    ||||||||| |||||||||||| ||| ||||| ||||| |||||| ||||||||| |||||    
T  39133717 tcatgctagtttccatattcatattaggattcaatcttgtatctctactattattttgaat 39133777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 13444077 - 13444265
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||| |||||||||||||| ||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||||||| || |  ||||||  ||    
T  13444077 gtagacgtctgttagcttctgatttagcaaccactgatgttaggtttattcggagacaagtcaacgaagtcgctcatagctttcctcggttggcttcacg 13444176  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatct-caactattattatgaatgaaatgcaataagtttcttcttgtaaa 201  Q
    |||| |||| |||||||||||| ||| ||||||||||| ||||| | ||||| |||||||||||||| |||||||||||||||||||||    
T  13444177 tcattctagtttccatattcatattaggattccatcttttatctcctactatcattatgaatgaaatacaataagtttcttcttgtaaa 13444265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 21689707 - 21689884
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||||||||  | ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||  ||||||||||||||||||||||||||| |||    
T  21689707 tgttagcttctaatctagtaacctctgatgttaggtttattcagagacaagtcaacgaagtcactca--gctttgctagagtggctttgcgtcatgttag 21689804  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||| ||| |||| |||||| |||||| |||||||||||||||||||| ||||||||| |||| |||||||    
T  21689805 tttccatattcatattatgatttcatcttgtatctctactattattatgaatgaaatacaataagttacttcctgtaaaa 21689884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 26400131 - 26400323
Alignment:
Q  10 gacggtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctt 109  Q
    ||||||||||| || ||| |||  | ||||| ||| |||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||    | ||    
T  26400131 gacggtagacacctcttacctttagatttagaaacctctgatgttaggtttattcatagacaagccaacaaagtcgctcatagttttgctaggaaagttt 26400230  T
Q  110 tgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
     |||||||||||| |||||||||||| ||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26400231 cgcgtcatgctagtttccatattcatattatgattccatattgtatctctactattattatgaatgaaatgcaataagtttcttcttgtaaaa 26400323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 7622657 - 7622782
Alignment:
Q  76 aacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatg 175  Q
    |||||| ||||| |||| |||||||  ||||||| |||| ||||||| || ||||||||| ||| |||| |||||| |||||| ||||||||||| ||||    
T  7622657 aacgaaatcgcttatagatttgctaaggtggcttcgcgt-atgctagttttcatattcatattaggatttcatcttgtatctctactattattataaatg 7622755  T
Q  176 aaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||||| ||| || ||||||||    
T  7622756 aaatgcaataaatttttttttgtaaaa 7622782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 39135493 - 39135526
Alignment:
Q  165 tattatgaatgaaatgcaataagtttcttcttgt 198  Q
    |||| |||||||||||||||||||||||||||||    
T  39135493 tattttgaatgaaatgcaataagtttcttcttgt 39135526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 42515766 - 42515701
Alignment:
Q  26 tagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcata 91  Q
    ||||||||| |||||||   ||||||||||| ||||||  |||||||||||||| |||||| ||||    
T  42515766 tagcttctgatttagtagtctctgatgttagatttatttagagacaagccaacgtagtcgcccata 42515701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 19396844 - 19396884
Alignment:
Q  142 attccatcttatatctcaactattattatgaatgaaatgca 182  Q
    |||||||||| ||||||||| ||||||||||||| ||||||    
T  19396844 attccatcttgtatctcaacaattattatgaatgtaatgca 19396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 6683 - 6860
Alignment:
Q  25 ttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagct 124  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  6683 ttagcttctgatttagtaacctctgatgttaggttcattcggagacaagacaacgaagtcgctcatagctttgctagagcggctttgcgtcatgctagtt 6782  T
Q  125 tccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  6783 tccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttattcttgtaaaa 6860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 48522162 - 48522307
Alignment:
Q  53 ttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatctta 152  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  48522162 ttaggtttattcggagacaagtcaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaagattccatctta 48522261  T
Q  153 tatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  48522262 tatctctactattattataaatgaaatgcaataagtttcttcttgt 48522307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 25070903 - 25070818
Alignment:
Q  117 tgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    |||||| |||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||    
T  25070903 tgctagtttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgtaaaa 25070818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 19956504 - 19956680
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||| ||||  ||||| ||| ||| || ||| ||||||| |||||||| |||||||||||||| |||| |||||||| || || |  || | |||||     
T  19956504 tgttagtttctaatttagcaacctcttattttaagtttatttggagacaaaccaacgaagtcgcttatagttttgctagggttgcctcccgccttgcta- 19956602  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
      ||||||| ||| ||| ||||||||||| |||||  | ||||||||||||||||||| |||||||||||||||||||||    
T  19956603 --tccatatgcatattaggattccatcttgtatctataatattattatgaatgaaatggaataagtttcttcttgtaaaa 19956680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 26347349 - 26347489
Alignment:
Q  62 ttcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaac 161  Q
    |||||||||||  ||| ||||||||||||| | ||  |||||||||||| | |||| |||  ||| ||||| || ||| ||||||||||| |||||| ||    
T  26347349 ttcggagacaaatcaatgaagtcgctcataaccttattagagtggctttacatcatactaatttctatatttatattatgattccatcttgtatctctac 26347448  T
Q  162 tattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||||||||| ||||  ||||| |||||||||||||||    
T  26347449 tattattatgaataaaataaaataaatttcttcttgtaaaa 26347489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 25070976 - 25070907
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatag 92  Q
    |||||||||||  ||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  25070976 tgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaacgaagttgctcatag 25070907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 11079900 - 11080068
Alignment:
Q  14 gtagacatctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 113  Q
    |||||||  ||||||||||   |||| |||||||| |||||||||| ||| |||||||| ||||||||||| || |||| || || || | | ||  | |    
T  11079900 gtagacacatgttagcttcaaatttaataacatcttatgttaggttcattaggagacaaaccaacgaagtctcttatagtttagcaagggcgactccgtg 11079999  T
Q  114 tcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgca 182  Q
    ||| ||||| |||  ||||||| | | ||||||||||| |||||| || |||||||| |||||||||||    
T  11080000 tcaggctagtttctgtattcatatcaggattccatcttgtatctctacgattattataaatgaaatgca 11080068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 15393568 - 15393495
Alignment:
Q  129 tattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    ||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||| |||| |||||  |||||||    
T  15393568 tattcatattaagatttcatcttgtatctctactgttattataaatgaaatgcattaagcttctttctgtaaaa 15393495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 15327478 - 15327523
Alignment:
Q  40 gtaacatctgatgttaggtttattcggagacaagccaacgaagtcg 85  Q
    ||||| |||||||||||||| ||| ||||||||||||| |||||||    
T  15327478 gtaacttctgatgttaggttcattaggagacaagccaatgaagtcg 15327523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 31592302 - 31592355
Alignment:
Q  48 tgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctag 101  Q
    |||||| ||||||||| ||||||||||||| ||||| |||||||| || |||||    
T  31592302 tgatgtgaggtttattaggagacaagccaatgaagttgctcatagtttagctag 31592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 27110 - 26930
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    |||||| |||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27110 ctgttatcttctgatttcgtaacctctgattttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 27011  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaa 202  Q
    | || ||||||||| |||  ||| |||||| ||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  27010 gttttcatattcatattagaatttcatcttgtatctctgctattattatgaatgaaatgcaataagttttttcttgtaaaa 26930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 5258 - 5431
Alignment:
Q  22 ctgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 121  Q
    |||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||    
T  5258 ctgttagcttttgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcataactttgctatagtgactttgcatcatgcta 5357  T
Q  122 gcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 195  Q
      |||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5358 atttccatattcatattaaaattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttct 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 58370 - 58553
Alignment:
Q  25 ttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagct 124  Q
    |||||||||| |||| |||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||  |||||||||| |    
T  58370 ttagcttctgatttaataacctctgatgttaggtttattggaagacaagccaacgaagtctctcatagctttgctcgagtggctttatgtcatgctagtt 58469  T
Q  125 tccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgtaaaaccaaaa 208  Q
    ||||||||||| ||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  58470 tccatattcatattagggttccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtcaaaacaaaa 58553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 216430 - 216576
Alignment:
Q  23 tgttagcttctgctttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 122  Q
    |||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  216430 tgttagattctgatttagtaacctttgatgttaggtttattcggagacaagccaacgaagtcgctcattcctttgctagagtggctttgcgccatgctag 216529  T
Q  123 cttccatattcattttaagattccatcttatatctcaactattatta 169  Q
     || ||||||||| ||| |||||||||| ||||||| ||||||||||    
T  216530 ttttcatattcatattaggattccatctaatatctctactattatta 216576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 5399 - 5316
Alignment:
Q  107 ctttgcgtcatgctagcttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 190  Q
    |||||||||||| ||| ||  |||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  5399 ctttgcgtcatgttagtttttatattcatattaagattccatcttgtatctctactattatcatgaatgaaatgcaataagttt 5316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 20703 - 20773
Alignment:
Q  128 atattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 198  Q
    |||||||| |||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  20703 atattcatattaagattacatcttgtatctctactattattataaatgaaatgcaataagtttcttcttgt 20773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 20650 - 20686
Alignment:
Q  48 tgatgttaggtttattcggagacaagccaacgaagtc 84  Q
    |||||||||||||| || |||||||||||||||||||    
T  20650 tgatgttaggtttaatcagagacaagccaacgaagtc 20686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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