View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3656_high_25 (Length: 237)

Name: NF3656_high_25
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3656_high_25
NF3656_high_25
[»] chr4 (17 HSPs)
chr4 (1-221)||(43365685-43365905)
chr4 (114-220)||(12499238-12499344)
chr4 (114-220)||(44363347-44363453)
chr4 (118-196)||(12499018-12499096)
chr4 (124-219)||(15562123-15562218)
chr4 (135-215)||(49888371-49888451)
chr4 (135-214)||(6216420-6216498)
chr4 (154-220)||(1351491-1351556)
chr4 (114-196)||(44362911-44362993)
chr4 (114-196)||(6216197-6216278)
chr4 (154-220)||(36061241-36061307)
chr4 (146-219)||(18879119-18879192)
chr4 (113-200)||(1351265-1351352)
chr4 (114-221)||(38435085-38435192)
chr4 (114-196)||(18879336-18879418)
chr4 (112-213)||(51871573-51871674)
chr4 (114-175)||(53320954-53321014)
[»] scaffold0157 (2 HSPs)
scaffold0157 (114-220)||(21133-21239)
scaffold0157 (118-196)||(21381-21459)
[»] chr8 (11 HSPs)
chr8 (117-221)||(13267796-13267899)
chr8 (111-216)||(36632863-36632966)
chr8 (112-220)||(39186150-39186259)
chr8 (114-218)||(24587087-24587191)
chr8 (114-220)||(20771649-20771755)
chr8 (114-220)||(20781443-20781549)
chr8 (136-220)||(3207640-3207724)
chr8 (114-191)||(3207862-3207939)
chr8 (118-221)||(32089251-32089354)
chr8 (111-191)||(38255405-38255485)
chr8 (113-188)||(36632635-36632709)
[»] chr5 (13 HSPs)
chr5 (113-218)||(3577543-3577645)
chr5 (111-220)||(13639589-13639698)
chr5 (113-220)||(5548087-5548194)
chr5 (111-220)||(30223781-30223889)
chr5 (112-220)||(39741491-39741599)
chr5 (118-190)||(3577779-3577851)
chr5 (114-189)||(30224037-30224112)
chr5 (122-220)||(13360991-13361089)
chr5 (114-200)||(40324246-40324331)
chr5 (111-190)||(14626198-14626277)
chr5 (131-221)||(42552556-42552646)
chr5 (168-219)||(14626452-14626503)
chr5 (167-221)||(40324469-40324523)
[»] chr7 (19 HSPs)
chr7 (114-200)||(44858060-44858145)
chr7 (111-200)||(37327293-37327382)
chr7 (114-221)||(3565593-3565700)
chr7 (145-220)||(37327521-37327596)
chr7 (111-221)||(26472029-26472137)
chr7 (111-221)||(26548469-26548577)
chr7 (167-221)||(45871760-45871814)
chr7 (114-191)||(29366350-29366427)
chr7 (113-208)||(4965340-4965435)
chr7 (114-220)||(29366575-29366681)
chr7 (146-221)||(39751209-39751284)
chr7 (114-200)||(27567850-27567935)
chr7 (114-188)||(42055286-42055358)
chr7 (158-220)||(46303785-46303847)
chr7 (111-196)||(3565366-3565451)
chr7 (114-191)||(36742220-36742297)
chr7 (114-196)||(23416132-23416213)
chr7 (111-220)||(20896262-20896373)
chr7 (114-182)||(27329342-27329409)
[»] chr1 (13 HSPs)
chr1 (135-221)||(7191883-7191969)
chr1 (114-221)||(26767619-26767725)
chr1 (114-220)||(38275980-38276084)
chr1 (134-221)||(43416250-43416335)
chr1 (111-221)||(9388790-9388900)
chr1 (114-196)||(43670696-43670778)
chr1 (111-191)||(42508251-42508331)
chr1 (112-221)||(41666293-41666402)
chr1 (154-220)||(12857495-12857561)
chr1 (135-217)||(27323397-27323479)
chr1 (114-191)||(15061449-15061526)
chr1 (135-220)||(43670921-43671005)
chr1 (146-191)||(43344830-43344875)
[»] chr3 (13 HSPs)
chr3 (113-220)||(39450848-39450955)
chr3 (114-196)||(25189645-25189727)
chr3 (114-220)||(39492284-39492390)
chr3 (111-191)||(38216335-38216415)
chr3 (114-189)||(39450619-39450694)
chr3 (111-220)||(14742178-14742285)
chr3 (114-220)||(43071766-43071869)
chr3 (167-220)||(38216134-38216187)
chr3 (114-191)||(14741939-14742016)
chr3 (135-196)||(39492533-39492594)
chr3 (114-190)||(32109775-32109851)
chr3 (117-188)||(864328-864399)
chr3 (130-188)||(39933574-39933632)
[»] chr2 (6 HSPs)
chr2 (135-221)||(35695325-35695411)
chr2 (111-221)||(1602637-1602746)
chr2 (112-188)||(40609661-40609738)
chr2 (145-220)||(35021196-35021270)
chr2 (146-221)||(34922016-34922091)
chr2 (147-191)||(42006389-42006433)
[»] chr6 (8 HSPs)
chr6 (113-221)||(28587838-28587946)
chr6 (113-220)||(6196698-6196805)
chr6 (146-221)||(10244512-10244587)
chr6 (114-188)||(28587615-28587689)
chr6 (112-189)||(6198092-6198169)
chr6 (114-220)||(33819805-33819910)
chr6 (113-176)||(10051435-10051498)
chr6 (122-220)||(2236964-2237062)
[»] scaffold0062 (2 HSPs)
scaffold0062 (114-220)||(20222-20328)
scaffold0062 (114-220)||(30390-30496)
[»] scaffold0633 (1 HSPs)
scaffold0633 (112-221)||(8827-8936)
[»] scaffold0122 (1 HSPs)
scaffold0122 (111-220)||(17752-17861)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43365685 - 43365905
Alignment:
Q  1 atccacatgagatgtgtaatgtatagctnnnnnnncgccaatcactatctgaattactaaacaaatactagctaacgaactgaagccccaccaataacca 100  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |    
T  43365685 atccacatgagatgtgtaatgtatagctaaaaaaacgccaatcactatctgaattactaaacaaataccagctaacgaaccgaagccccaccaataacta 43365784  T
Q  101 agattgctcgggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365785 agattgctcgggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 43365884  T
Q  201 taatattttgtctaaaatatg 221  Q
    |||||||||||||||||||||    
T  43365885 taatattttgtctaaaatatg 43365905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 12499344 - 12499238
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||||||||  |||||| |  ||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  12499344 ttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtct 12499245  T
Q  214 aaaatat 220  Q
    |||||||    
T  12499244 aaaatat 12499238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 44363453 - 44363347
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||  ||||  |||||| | |||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||  ||||||||||||    
T  44363453 ttaattgcagttttggtccccttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtct 44363354  T
Q  214 aaaatat 220  Q
    |||||||    
T  44363353 aaaatat 44363347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 12499018 - 12499096
Alignment:
Q  118 ttgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    |||||||||| ||||| ||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||    
T  12499018 ttgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctc 12499096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 15562123 - 15562218
Alignment:
Q  124 tttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaata 219  Q
    ||||| |||| | ||||||| ||||||   |||||| ||| | |||||||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  15562123 tttttgtcccccgatttttatcattttatgaaattgatccccctattttaaaatttgacagttttggtccctctatctaataatttgtctaaaata 15562218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 49888451 - 49888371
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaa 215  Q
    ||||||||| ||||||||||||||||| | | |||||||||||| || | |||| ||||||||||| |||| |||||||||    
T  49888451 ctatttttatcattttgcaaaattggttcccctattttaaaatttgataatttttgttcctctatcaaatactttgtctaa 49888371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 6216498 - 6216420
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtcta 214  Q
    ||||||||| ||||||||||||||| ||| | |||||||||||| ||||  |||||| |||||||| |||||||||||||    
T  6216498 ctatttttatcattttgcaaaattgttcccc-tattttaaaatttgacaactttggtccctctatcaaatattttgtcta 6216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 1351556 - 1351491
Alignment:
Q  154 aaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||||||||| ||||||||||||| ||| ||||||| |||||||| |||| ||||||||||||||    
T  1351556 aaattggtcctcctattttaaaattcaacaattttggtccctctatcaaata-tttgtctaaaatat 1351491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 44362911 - 44362993
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    ||||||||||||||  |||| ||||||| ||||||||| | ||||||||| | | |||||||| |||||||||||||| ||||    
T  44362911 ttaattgcagttttggtccccctattttcaccattttgtagaattggtccccctgttttaaaactcgacagttttggtccctc 44362993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 6216197 - 6216278
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    ||||||||| ||||  |||| ||||||| |||| |||||| ||||||||| | ||||||||||||||| ||||||||| ||||    
T  6216197 ttaattgcaattttggtccc-ctattttcaccactttgcagaattggtccccctattttaaaattcgatagttttggtccctc 6216278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 36061307 - 36061241
Alignment:
Q  154 aaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||||||| | |||||||||||| |||| |||||||||||||||| || | ||| ||||||||||    
T  36061307 aaattggtccccctattttaaaattggacaattttggttcctctatcaaaaaatttatctaaaatat 36061241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 18879119 - 18879192
Alignment:
Q  146 attttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaata 219  Q
    |||||||||||| ||||  | ||||||||||||| ||| |||||||  ||||||  ||||||||||||||||||    
T  18879119 attttgcaaaatcggtcgccctattttaaaattcaacaattttggtcactctataaaatattttgtctaaaata 18879192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 1351265 - 1351352
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 200  Q
    |||||||||| ||||  |||  ||||||| || | |||||| ||||||| | | ||||||||||||||||| ||||||| ||||||||    
T  1351265 tttaattgcaattttggtcctcctattttcacaactttgcagaattggttcccttattttaaaattcgacaattttggtccctctatc 1351352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 38435085 - 38435192
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    |||||||||||||| ||||  ||||||  | |||||||   ||| |||| || |||||||||||| |||||||||||| |||| | | ||| ||| ||||    
T  38435085 ttaattgcagttttgatcctcctatttccatcattttgtggaatcggtcttcctattttaaaatttgacagttttggtccctccaccaaatgtttggtct 38435184  T
Q  214 aaaatatg 221  Q
    ||||||||    
T  38435185 aaaatatg 38435192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 18879418 - 18879336
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    ||||||||| ||||  |||| ||||||| ||||||||||| ||||| ||| | || ||||||||| |||| ||||||| ||||    
T  18879418 ttaattgcaattttggtccccctattttcaccattttgcataattgatccccctaatttaaaatttgacaattttggtccctc 18879336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 51871573 - 51871674
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgt 211  Q
    ||||||||||||||||  |   |||||||| ||||||||   |||||||||  | |||||||||||| ||||| ||| ||  |||||||||||| |||||    
T  51871573 gtttaattgcagttttggtttttctattttcaccattttatgaaattggtctccgtattttaaaatttgacagctttagtctctctatctaataatttgt 51871672  T
Q  212 ct 213  Q
    ||    
T  51871673 ct 51871674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 53320954 - 53321014
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaa 175  Q
    ||||||||||||||  || | ||||||||| |||||||||||||| |||||| |||||||||    
T  53320954 ttaattgcagttttggtcac-ctatttttatcattttgcaaaattagtcctcctattttaaa 53321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 21133 - 21239
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||||||||  |||||| |  ||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  21133 ttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtct 21232  T
Q  214 aaaatat 220  Q
    |||||||    
T  21233 aaaatat 21239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 21459 - 21381
Alignment:
Q  118 ttgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    |||||||||| ||||| ||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||    
T  21459 ttgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctc 21381  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 13267796 - 13267899
Alignment:
Q  117 attgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaa 216  Q
    |||| ||||||  |||| |||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13267796 attgaagttttggtccccctatttttactattttgtaaaattggtcccc-tattttaaaattcgacagttttggtccctctttctaatattttgtttaaa 13267894  T
Q  217 atatg 221  Q
    |||||    
T  13267895 atatg 13267899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 36632966 - 36632863
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    |||||||||||||||||  |||| |||||||||||||| |||| ||||| |||  |||||||||| ||||||||||||| | |||||||| |||||||||    
T  36632966 ggtttaattgcagttttagtccc-ctatttttaccattctgcagaattgatccctatattttaaagttcgacagttttgatccctctatc-aatattttg 36632869  T
Q  211 tctaaa 216  Q
    ||||||    
T  36632868 tctaaa 36632863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 39186150 - 39186259
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaa-ttcgacagttttggttcctctatctaatattttg 210  Q
    |||||||| |||||||  |||  ||||||| | ||||||||||||||||||| | |||||||||| ||||||| ||||| | ||||||||  ||||||||    
T  39186150 gtttaattacagttttggtcctcctattttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttgatccctctatcacatattttg 39186249  T
Q  211 tctaaaatat 220  Q
    ||||||||||    
T  39186250 tctaaaatat 39186259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 24587087 - 24587191
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||| ||||||  | || |||||||||| |||||| |   ||||||  ||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  24587087 ttaattgtagttttggttcccctatttttactattttgtagttttggtctccatattttaaaattcgacaattttggtccctctatcaaatattttgtct 24587186  T
Q  214 aaaat 218  Q
    |||||    
T  24587187 aaaat 24587191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 20771755 - 20771649
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||| ||||||  |||| ||||||| | |||||||||||||||||||   ||||||||||||  ||| |||||||||||||||| || |  ||||||    
T  20771755 ttaattgtagttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtct 20771656  T
Q  214 aaaatat 220  Q
    |||||||    
T  20771655 aaaatat 20771649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 20781549 - 20781443
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||| ||||||  |||| ||||||| | |||||||||||||||||||   ||||||||||||  ||| |||||||||||||||| || |  ||||||    
T  20781549 ttaattgtagttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtct 20781450  T
Q  214 aaaatat 220  Q
    |||||||    
T  20781449 aaaatat 20781443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 3207640 - 3207724
Alignment:
Q  136 tatttttaccattttgcaaaattggtc-ctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||| | |||||| ||||||||||| ||| ||||||||||||||||| |||| || |||||||| |||||||||||||||||||    
T  3207640 tattttcatcattttacaaaattggtctctc-tattttaaaattcgacaattttagtccctctatcaaatattttgtctaaaatat 3207724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 3207939 - 3207862
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    ||||||||| ||||| |||| ||||||| || |||||||| ||||||||| | ||||||||||||||| |||||||||    
T  3207939 ttaattgcactttttgtccccctattttcactattttgcagaattggtccccctattttaaaattcgatagttttggt 3207862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 32089354 - 32089251
Alignment:
Q  118 ttgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaa 217  Q
    ||||||||||  |||| ||||||| | | |||||  |||||||||| | |||||| || |||||||||||||||  |||||||||||| ||||||| |||    
T  32089354 ttgcagttttggtccccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtcttaaa 32089255  T
Q  218 tatg 221  Q
    ||||    
T  32089254 tatg 32089251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 38255485 - 38255405
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    |||||||||||||||||  |||   |||||||| | ||||| | ||||| ||| |||||||||||||||||||||||||||    
T  38255485 ggtttaattgcagttttggtcctcttatttttatccttttgtagaattgatccccatattttaaaattcgacagttttggt 38255405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 36632635 - 36632709
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggt-cctcatattttaaaattcgacagtttt 188  Q
    ||||||| ||||||| |||||  ||||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||    
T  36632635 tttaattacagttttgatccca-tatttttacgattttgcataattggttcctc-tattttaaaattcgacaatttt 36632709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 3577543 - 3577645
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtc 212  Q
    ||||||||||||||| ||||   ||||||   |||||||||||||||||| || ||||||||||||||||| ||||||| |||||||| |||||||||||    
T  3577543 tttaattgcagttttgatcctcatatttt---cattttgcaaaattggtcttcctattttaaaattcgacaattttggtacctctatcaaatattttgtc 3577639  T
Q  213 taaaat 218  Q
    ||||||    
T  3577640 taaaat 3577645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 13639698 - 13639589
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    ||||||||| |||||||  ||||| |||||| | ||||||||||||||||||| | ||||||||||||| | | ||||||| ||||||||  ||||||||    
T  13639698 ggtttaattacagttttggtccctttattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttg 13639599  T
Q  211 tctaaaatat 220  Q
    ||||||||||    
T  13639598 tctaaaatat 13639589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 5548087 - 5548194
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtc 212  Q
    |||||||| ||||||  ||||| ||||||||  ||||||  ||||||||||   ||||||||||||||||| ||||||| ||| |||| |||||||||||    
T  5548087 tttaattgtagttttagtccctttatttttattattttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtc 5548186  T
Q  213 taaaatat 220  Q
    ||||||||    
T  5548187 taaaatat 5548194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 30223781 - 30223889
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcc-tcatattttaaaattcgacagttttggttcctctatctaatatttt 209  Q
    |||||||||| |||||| ||||| || |||| | |||||||| |||||||||| ||| ||||| |||||||||||||||||| | |||||| ||||||||    
T  30223781 ggtttaattgtagttttgatccc-cttttttcatcattttgcgaaattggtccctca-atttttaaattcgacagttttggtccatctatcaaatatttt 30223878  T
Q  210 gtctaaaatat 220  Q
    |||||||||||    
T  30223879 gtctaaaatat 30223889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 39741599 - 39741491
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgt 211  Q
    ||||||||||||||||  |||||||||||| | |||||||  || ||| ||  | ||||||||||||||| | ||||| | |||||||| ||||||||||    
T  39741599 gtttaattgcagttttagtccctctattttcatcattttgtgaatttgatctccttattttaaaattcgataattttgatccctctatcaaatattttgt 39741500  T
Q  212 ctaaaatat 220  Q
    |||||||||    
T  39741499 ctaaaatat 39741491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 3577851 - 3577779
Alignment:
Q  118 ttgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttgg 190  Q
    ||||||||||  |||||||||||| ||||||||| | ||||||||| | |||||||||||| |||||||||||    
T  3577851 ttgcagttttagtccctctattttcaccattttgaagaattggtccccctattttaaaatttgacagttttgg 3577779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 30224112 - 30224037
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttg 189  Q
    |||||||||||||| |||||  |||||||| ||||||||| ||||||||| | |||| ||||| ||||||||||||    
T  30224112 ttaattgcagttttgatccccttatttttatcattttgcataattggtccccctattgtaaaaatcgacagttttg 30224037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 13360991 - 13361089
Alignment:
Q  122 agtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||| ||||||||||||| |  ||||||| |||||| ||  | ||||||||||||||||| ||||| |  |||||||  ||||||||||||||||||    
T  13360991 agttttgatccctctattttcattattttgcgaaattgatctccttattttaaaattcgacaattttgatctctctatcacatattttgtctaaaatat 13361089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 40324246 - 40324331
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 200  Q
    ||||||||||||||  |||||||||||||| ||||||  |||||||| | ||| |||||||||||||| ||||||| | ||||||||    
T  40324246 ttaattgcagttttggtccctctatttttatcattttataaaattggccttca-attttaaaattcgatagttttgatccctctatc 40324331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 14626198 - 14626277
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttgg 190  Q
    ||||||||| |||||||  ||||| |||||| ||  |||| || ||||||||||| |||||||||||| |||||||||||    
T  14626198 ggtttaattacagttttggtccctttattttcacttttttacagaattggtcctcctattttaaaatttgacagttttgg 14626277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 42552556 - 42552646
Alignment:
Q  131 ccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    ||||||||||| ||||||||| | |||||||||   |||||||||||||||||||| || |  | ||| |  |||||||||||||||||||    
T  42552556 ccctctattttcaccattttgtagaattggtccctgtattttaaaattcgacagttctgatctccctaacacatattttgtctaaaatatg 42552646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 14626503 - 14626452
Alignment:
Q  168 attttaaaattcgacagttttggttcctctatctaatattttgtctaaaata 219  Q
    |||||||||| ||||| ||||| ||||||||||  |||||||||||||||||    
T  14626503 attttaaaatccgacaattttgattcctctatcacatattttgtctaaaata 14626452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 40324523 - 40324469
Alignment:
Q  167 tattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    ||||||||||||||||||||||| |   |||||||||  ||||||||||||||||    
T  40324523 tattttaaaattcgacagttttgatcattctatctaaatttttgtctaaaatatg 40324469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 44858145 - 44858060
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 200  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||| | |||||||||||| |||||||||||| ||||||||    
T  44858145 ttaattgcagttttgatccccctatttttaccattttgcaaaa-tggtccccctattttaaaatttgacagttttggtccctctatc 44858060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 37327293 - 37327382
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 200  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||| || |||||| | ||||||||||||||||| |||||||  |||||||    
T  37327293 ggtttaattgcagttttgatccccctattttcaccattttgcagaaatggtccccctattttaaaattcgacaattttggtctctctatc 37327382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 3565700 - 3565593
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||  | |  ||||||| || ||||||||||||||||   | | ||||| ||||||||||||||||  |||||||||||||||||||||    
T  3565700 ttaattgcagttttggttctcctattttcactattttgcaaaattggtttccctgttttataattcgacagttttggaccctctatctaatattttgtct 3565601  T
Q  214 aaaatatg 221  Q
    ||||||||    
T  3565600 aaaatatg 3565593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 37327596 - 37327521
Alignment:
Q  145 cattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||||| |||||||||| | |||||||||||| |||| ||||||| |||||||| ||| |||||||||||||||    
T  37327596 cattttgcgaaattggtccccctattttaaaattggacaattttggtccctctatcaaattttttgtctaaaatat 37327521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 26472137 - 26472029
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    ||||| ||||||||||| ||||| || |||| |||||||| |||| ||||||| | ||||| ||||||||||||||||| | ||| ||| ||||||||||    
T  26472137 ggtttgattgcagttttgatccccctgttttcaccattttccaaatttggtcccc-tattt-aaaattcgacagttttgatccctttatataatattttg 26472040  T
Q  211 tctaaaatatg 221  Q
     ||||||||||    
T  26472039 actaaaatatg 26472029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 26548577 - 26548469
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    ||||| ||||||||||| ||||| || |||| |||||||| |||| ||||||| | ||||| ||||||||||||||||| | ||| ||| ||||||||||    
T  26548577 ggtttgattgcagttttgatccccctgttttcaccattttccaaatttggtcccc-tattt-aaaattcgacagttttgatccctttatataatattttg 26548480  T
Q  211 tctaaaatatg 221  Q
     ||||||||||    
T  26548479 actaaaatatg 26548469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 45871760 - 45871814
Alignment:
Q  167 tattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  45871760 tattttaaaattcaacagttttggtccctctatataatattttgtctaaaatatg 45871814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 29366350 - 29366427
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    ||||||| ||||||  |||| ||||||| || |||||||||||||||||| ||||||||||||||||| || ||||||    
T  29366350 ttaattgtagttttggtccccctattttcacaattttgcaaaattggtccccatattttaaaattcgataggtttggt 29366427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 4965340 - 4965435
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattt 208  Q
    |||||||||||||||  |||| ||||||| | ||||||||  ||||||||| | |||||||||| | |||||||||||| |||| ||| |||||||    
T  4965340 tttaattgcagttttggtccccctattttcaacattttgcggaattggtccgcttattttaaaacttgacagttttggtccctcaatcaaatattt 4965435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 29366681 - 29366575
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggt-cctcatattttaaaattcgacagttttggttcctctatctaatattttgtc 212  Q
    ||||||||||||||  |||||||||||| | || |||||||||||| | |||| |||||||| ||| |||| |||||||   |||||| |||||||||||    
T  29366681 ttaattgcagttttggtccctctattttcatcaatttgcaaaattgattcctc-tattttaatatttgacaattttggtcattctatcaaatattttgtc 29366583  T
Q  213 taaaatat 220  Q
    ||||||||    
T  29366582 taaaatat 29366575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 39751209 - 39751284
Alignment:
Q  146 attttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    |||||||||||||||||| |  |||||||||||| ||| ||||||| | || ||| |||||||||| |||||||||    
T  39751209 attttgcaaaattggtccccccattttaaaattctacaattttggtccttccatcaaatattttgtttaaaatatg 39751284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 27567935 - 27567850
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatc 200  Q
    |||||||||||||| ||||| ||||||| | | ||| |   ||||||||| | ||||||||||||||||||||||||| ||||||||    
T  27567935 ttaattgcagttttgatccc-ctattttcatcttttcgtggaattggtccccctattttaaaattcgacagttttggtccctctatc 27567850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 42055286 - 42055358
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagtttt 188  Q
    ||||||||||||||  |||| ||||||||||||||||| | ||||||||| | |||||||||||| |||||||||    
T  42055286 ttaattgcagttttggtccc-ctatttttaccattttgtagaattggtcc-cttattttaaaatttgacagtttt 42055358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 46303847 - 46303785
Alignment:
Q  158 tggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||  || |||| ||||||||||    
T  46303847 tggtcctcctattttaaaattcgacaattttggtccctctatcatatgttttatctaaaatat 46303785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 3565366 - 3565451
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    |||||||||||||||||  || | ||||||  | | |||||  |||||||||||| ||||||||||||||| || |||||||||||    
T  3565366 ggtttaattgcagttttggtctccctatttacatctttttgtgaaattggtcctcctattttaaaattcgatagatttggttcctc 3565451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 36742297 - 36742220
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    ||||||| | |||| ||||| ||||||| | || ||||||||||||||||  |||||||||||||  |||||||||||    
T  36742297 ttaattgtaattttaatccccctattttcatcaatttgcaaaattggtccctatattttaaaatttaacagttttggt 36742220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 23416213 - 23416132
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    |||||||||||| |  ||| |||||||| |||||||||||   ||||||| | |||||||||||| |||||||||||| ||||    
T  23416213 ttaattgcagttctggtccttctattttcaccattttgcagttttggtcccc-tattttaaaatttgacagttttggtccctc 23416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 20896262 - 20896373
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatat--tt 208  Q
    ||||||||| |||||||  |||||||||||| |  |||||   |||||||||    ||||||||||||||| | ||||||| ||||||||  ||||  ||    
T  20896262 ggtttaattacagttttggtccctctattttcataattttatgaaattggtcgcactattttaaaattcgataattttggtccctctatcacatataatt 20896361  T
Q  209 tgtctaaaatat 220  Q
    ||||||||||||    
T  20896362 tgtctaaaatat 20896373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 27329342 - 27329409
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgac 182  Q
    ||||||||||||||| ||| ||| | |||| | |||||||||||||||| || ||||| ||||||||||    
T  27329342 ttaattgcagtttttgtcc-tctgtatttatctttttgcaaaattggtcttcctatttcaaaattcgac 27329409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 7191883 - 7191969
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    ||||||| | |||||||| |||| ||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  7191883 ctattttaatcattttgccaaataggtccccatattttaaaattcgacagttttggtccctttatctaaaattttgtctaaaatatg 7191969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 26767619 - 26767725
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||  || | ||||||| ||||||||| ||||||| ||| | |||||||||||| |||||||||||| ||||||| | |||||||||||    
T  26767619 ttaattgcagttttggtctccctattttcaccattttgtaaaattgttcccc-tattttaaaatttgacagttttggtccctctatattatattttgtct 26767717  T
Q  214 aaaatatg 221  Q
    ||||||||    
T  26767718 aaaatatg 26767725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 38276084 - 38275980
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||  |||| |||||| || |||||||| |||||||||||  ||||||||||||| ||| ||||||| ||| |||| ||||| ||||||    
T  38276084 ttaattgcagttttggtccccctatttatatcattttgcgaaattggtcct--tattttaaaattcaacaattttggtccctttatcaaatatgttgtct 38275987  T
Q  214 aaaatat 220  Q
    |||||||    
T  38275986 aaaatat 38275980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 43416250 - 43416335
Alignment:
Q  134 tctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    |||||||| ||||||||||||||||| ||||| | ||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||    
T  43416250 tctattttcaccattttgcaaaattgatcctc-tgttttaaaat-cgacagttttggtccctctatttaataatttgtctaaaatatg 43416335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 9388790 - 9388900
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    |||||||||| ||||||   ||| ||||||||| | ||||| ||||||||||| | ||||||||||||||||| |||| || ||||||||| | ||||||    
T  9388790 ggtttaattgtagttttggcccccctatttttatctttttgtaaaattggtccccctattttaaaattcgacaattttagtccctctatctcaaattttg 9388889  T
Q  211 tctaaaatatg 221  Q
    | |||||||||    
T  9388890 tttaaaatatg 9388900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 43670696 - 43670778
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    ||||||||||||||  |||| ||||||| ||  ||||||||||||||||||| |||||||||||||||| || ||||| ||||    
T  43670696 ttaattgcagttttggtccccctattttcactcttttgcaaaattggtcctcctattttaaaattcgactgtcttggtccctc 43670778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 42508251 - 42508331
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    |||||||||||||||||  |||  ||||||| |||||||| || || |||||| | |||||||||||||||||||||||||    
T  42508251 ggtttaattgcagttttggtcctcctattttcaccattttacagaaatggtccccctattttaaaattcgacagttttggt 42508331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 41666402 - 41666293
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgt 211  Q
    ||||||||||| ||||  ||| |||||||| | ||||||  ||||||| | | | ||||||||||||||||||||||||| ||  ||  ||||||||| |    
T  41666402 gtttaattgcatttttggtccttctattttcatcattttataaaattgattcccctattttaaaattcgacagttttggtcccattacataatattttat 41666303  T
Q  212 ctaaaatatg 221  Q
    ||||||||||    
T  41666302 ctaaaatatg 41666293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 12857561 - 12857495
Alignment:
Q  154 aaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    |||||||||||| |||||||||||| |||| |||||||  ||||||| ||| ||||||||| |||||    
T  12857561 aaattggtcctcctattttaaaattggacaattttggtctctctatcaaattttttgtctagaatat 12857495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 27323397 - 27323479
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaa 217  Q
    ||||||| |||||||||  |||||||||  | | || |||||||||| |||||||||| ||| |||||||| |||||||||||    
T  27323397 ctattttcaccattttgtgaaattggtctccctgttgtaaaattcgatagttttggtttctcaatctaataatttgtctaaaa 27323479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 15061449 - 15061526
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    |||||||||||||| ||| |  |||||| | ||||||| | ||||| ||||| |||||||||||| ||||||||||||    
T  15061449 ttaattgcagttttgatctccatattttcatcattttgtagaattgatcctcctattttaaaatttgacagttttggt 15061526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 43671005 - 43670921
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    ||||||| | |||||||| |||||| || || ||||||||||||||||| ||||| | |||||||   ||||||||||||||||||    
T  43671005 ctattttcatcattttgcgaaattgttc-tcttattttaaaattcgacaattttgatccctctattacatattttgtctaaaatat 43670921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 43344830 - 43344875
Alignment:
Q  146 attttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    |||||||| ||||||||| | |||||||||||||||||| ||||||    
T  43344830 attttgcagaattggtccccctattttaaaattcgacaggtttggt 43344875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 39450955 - 39450848
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtc 212  Q
    |||||||||||||||  |||  ||||||||| |||| |||||||||||||| | ||||||||||||  ||| |||||||  ||||||| |||||||||||    
T  39450955 tttaattgcagttttggtcctcctatttttatcattatgcaaaattggtccacctattttaaaatttaacaattttggtctctctatcaaatattttgtc 39450856  T
Q  213 taaaatat 220  Q
    ||||||||    
T  39450855 taaaatat 39450848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 25189727 - 25189645
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    ||||||||||||||  |||| ||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||| ||||    
T  25189727 ttaattgcagttttggtccccctatttttaccattttgcagaattggtccccctattttaaaattcaacagttttggtccctc 25189645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 39492284 - 39492390
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||||||||  | ||  |||||| | ||||||||||||||||||| | |||| |||||||||||| | ||||| |||||||| ||||||||||||    
T  39492284 ttaattgcagttttggttcccttattttcatcattttgcaaaattggtccccctattataaaattcgacaatgttggtccctctatcaaatattttgtct 39492383  T
Q  214 aaaatat 220  Q
    |||||||    
T  39492384 aaaatat 39492390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 38216415 - 38216335
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    |||||||||||||||||  |||| ||||||| ||||||||||| ||||||||| | ||||||||||||||||| |||||||    
T  38216415 ggtttaattgcagttttggtccccctattttcaccattttgcataattggtccccctattttaaaattcgacacttttggt 38216335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 39450619 - 39450694
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttg 189  Q
    ||||||||||||||| |||| ||||||| ||||||||||| ||||||||| | |||||||||||| ||||||||||    
T  39450619 ttaattgcagtttttgtccccctattttcaccattttgcagaattggtccccctattttaaaatttgacagttttg 39450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 14742285 - 14742178
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    |||||||||||||||||  ||    |||||| | |||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||| ||||  |||    
T  14742285 ggtttaattgcagttttggtcttcttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaata--ttg 14742188  T
Q  211 tctaaaatat 220  Q
    ||||||||||    
T  14742187 tctaaaatat 14742178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 43071869 - 43071766
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    |||||||||||||| |||||  |||||||| |||||||  ||||||||||   ||||||||||||||||| ||||||| | |||||| ||||  ||||||    
T  43071869 ttaattgcagttttgatccca-tatttttatcattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaata--ttgtct 43071773  T
Q  214 aaaatat 220  Q
    |||||||    
T  43071772 aaaatat 43071766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 38216134 - 38216187
Alignment:
Q  167 tattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    ||||||||||||||||| |||||||  ||||||| |||||||||||||||||||    
T  38216134 tattttaaaattcgacaattttggtcgctctatcaaatattttgtctaaaatat 38216187  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 14741939 - 14742016
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    ||||||||||||||  |||| ||||||| |||| ||||||||||||||||   || ||||||||||  ||||||||||    
T  14741939 ttaattgcagttttggtccccctattttcaccactttgcaaaattggtccctctaatttaaaattcatcagttttggt 14742016  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 39492594 - 39492533
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctc 196  Q
    ||||||| ||||||||||| ||||||||| | |||||||| ||||| |||||||||| ||||    
T  39492594 ctattttcaccattttgcagaattggtccccgtattttaacattcgtcagttttggtccctc 39492533  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 32109851 - 32109775
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttgg 190  Q
    ||||||||||||||  |||||||||||| | | |||||   ||||||||| | ||||| ||||||||||||||||||    
T  32109851 ttaattgcagttttggtccctctattttgatctttttgttgaattggtccccctatttcaaaattcgacagttttgg 32109775  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 864328 - 864399
Alignment:
Q  117 attgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagtttt 188  Q
    |||||| |||| |||| || ||||| ||||||||||| | ||||||||  |||||||||||| |||||||||    
T  864328 attgcaattttgatccttcaattttgaccattttgcagatttggtccttctattttaaaatttgacagtttt 864399  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 39933574 - 39933632
Alignment:
Q  130 tccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagtttt 188  Q
    ||||| ||||||||||||||||| |||||| ||  ||||||||||||||| ||| ||||    
T  39933574 tccctttatttttaccattttgcgaaattgatcaccatattttaaaattcaacaatttt 39933632  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 35695325 - 35695411
Alignment:
Q  135 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    ||||||| ||||||||| ||||||||||| | |||||||||||||||||  |||||| ||| ||||||||||||| |||||||||||    
T  35695325 ctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtccctttatctaatattttatctaaaatatg 35695411  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 1602637 - 1602746
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 210  Q
    |||||||||||||||||  || | ||||||| ||||||||||  ||||| ||| | | |||||||||| |||||||||||| |||| ||| ||||||| |    
T  1602637 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttgg 1602735  T
Q  211 tctaaaatatg 221  Q
    |||||||||||    
T  1602736 tctaaaatatg 1602746  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 40609661 - 40609738
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggt-cctcatattttaaaattcgacagtttt 188  Q
    |||||||||||  ||| ||||||||||||||| |||||||| |||||| | |||| ||||||||||||||||| ||||    
T  40609661 gtttaattgcatatttgatccctctatttttatcattttgcgaaattgatccctcctattttaaaattcgacaatttt 40609738  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 35021270 - 35021196
Alignment:
Q  145 cattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    ||||||||||||||||||||| |||| |||| || |||| ||||||| | |||||| ||| |||||||||||||||    
T  35021270 cattttgcaaaattggtcctcctattataaa-ttagacaattttggtccttctatcaaattttttgtctaaaatat 35021196  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 34922016 - 34922091
Alignment:
Q  146 attttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    |||||||||| || |||  | |||||||||||||||| |||||||| ||||||| |||||| ||  ||||||||||    
T  34922016 attttgcaaatttagtctccctattttaaaattcgacggttttggtccctctatataatatcttcactaaaatatg 34922091  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 42006389 - 42006433
Alignment:
Q  147 ttttgcaaaattggtcctcatattttaaaattcgacagttttggt 191  Q
    ||||| ||||| ||||||| |||||||||||| ||||||||||||    
T  42006389 ttttgtaaaatcggtcctcctattttaaaatttgacagttttggt 42006433  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 28587946 - 28587838
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtc 212  Q
    |||| ||||||||||  |||| ||||||| ||||||||| ||| |||| || | ||||||||||||||||||||||||| ||||| | |||||| ||| |    
T  28587946 tttatttgcagttttggtccccctattttcaccattttgtaaatttggcccccctattttaaaattcgacagttttggtccctctttataatatcttgac 28587847  T
Q  213 taaaatatg 221  Q
    |||||||||    
T  28587846 taaaatatg 28587838  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 6196698 - 6196805
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtc 212  Q
    |||||||| ||||||  ||||  |||||| | |||||| | |||||||||| | ||||||||||||| ||| ||||||| |||||||| |||||||||||    
T  6196698 tttaattgtagttttggtccccttattttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtccctctatcaaatattttgtc 6196797  T
Q  213 taaaatat 220  Q
    ||||||||    
T  6196798 taaaatat 6196805  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 10244587 - 10244512
Alignment:
Q  146 attttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatg 221  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||   ||||||||||||||||||    
T  10244587 attttgcaaaattggtccccctattttaaaatttgacagttttggttcctatatcatttattttgtctaaaatatg 10244512  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 28587615 - 28587689
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagtttt 188  Q
    ||||||||||||||  |||| || |||| ||||||||||||| ||||||| | ||||||||||||||||||||||    
T  28587615 ttaattgcagttttggtccccctgttttcaccattttgcaaatttggtccccctattttaaaattcgacagtttt 28587689  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 6198169 - 6198092
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttg 189  Q
    ||||||||||||||||  ||| |||||||| ||||||||| | ||||||||| | |||||||||||||| ||||||||    
T  6198169 gtttaattgcagttttggtccatctattttcaccattttgtagaattggtccccctattttaaaattcgtcagttttg 6198092  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 33819805 - 33819910
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    |||||||||||||| |||    |||||||| |||||||  |||| ||| | | |||||||||||||| || ||||| ||| |||||| ||||||||||||    
T  33819805 ttaattgcagttttgatcatcttatttttatcattttgtgaaatcggttccc-tattttaaaattcggcaattttgtttcatctatcaaatattttgtct 33819903  T
Q  214 aaaatat 220  Q
    |||||||    
T  33819904 aaaatat 33819910  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 10051435 - 10051498
Alignment:
Q  113 tttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaa 176  Q
    |||||||| | ||||| || ||||||||||||||||||  ||||||||||||  ||||||||||    
T  10051435 tttaattgtattttttgtctctctatttttaccattttataaaattggtccttttattttaaaa 10051498  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 2237062 - 2236964
Alignment:
Q  122 agtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatat 220  Q
    ||||||| || | ||||||| | |||||||| |||||||||| |||| ||| |||||  | | ||||| | ||||||||  ||||||||||||||||||    
T  2237062 agtttttgtctccctattttcatcattttgcgaaattggtccccataattttaaattttataattttgatccctctatcacatattttgtctaaaatat 2236964  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 20222 - 20328
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||| ||||  ||||| |||| ||| ||||||||||||||| ||  | |||||| |||||||| | ||||||| | |||||| ||||||||||||    
T  20222 ttaattgcacttttagtccctttattattagcattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtct 20321  T
Q  214 aaaatat 220  Q
    |||||||    
T  20322 aaaatat 20328  T

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Target: scaffold0062; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 30390 - 30496
Alignment:
Q  114 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 213  Q
    ||||||||| ||||  ||||| |||| ||| ||||||||||||||| ||  | |||||| |||||||| | ||||||| | |||||| ||||||||||||    
T  30390 ttaattgcacttttagtccctttattattagcattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtct 30489  T
Q  214 aaaatat 220  Q
    |||||||    
T  30490 aaaatat 30496  T

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Target: scaffold0633 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 8827 - 8936
Alignment:
Q  112 gtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgt 211  Q
    ||||||||||| ||||  ||| |||||||| | ||||||  ||||||| | | | ||||||||||||||||||||||||| ||  ||  ||||||||| |    
T  8827 gtttaattgcatttttggtccttctattttcatcattttataaaattgattcccctattttaaaattcgacagttttggtcccattacataatattttat 8926  T
Q  212 ctaaaatatg 221  Q
    ||||||||||    
T  8927 ctaaaatatg 8936  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 17861 - 17752
Alignment:
Q  111 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtc-ctcatattttaaaattcgacagttttggttcctctatctaatatttt 209  Q
    |||||||||| | ||||  | ||| |||||| | ||||||| |||||||||| ||| | ||||||||||| ||| |||||||   |||||| ||||||||    
T  17861 ggtttaattgtatttttggttcctttattttcatcattttgtaaaattggtctctc-tgttttaaaattccacaattttggtcattctatcaaatatttt 17763  T
Q  210 gtctaaaatat 220  Q
    |||||||||||    
T  17762 gtctaaaatat 17752  T

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