View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_high_6 (Length: 455)
Name: NF3656_high_6
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 179 - 440
Target Start/End: Complemental strand, 53071096 - 53070835
Alignment:
| Q |
179 |
aagaaaagtagtaatttattcgattaatcatctccactgcaatgaagagatttttatcttaaaagagaatatatcaagtatacaatgctgtttggttttg |
278 |
Q |
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| T |
53071096 |
aagaaaagtagtaatttattcgattaatcatctccactgcaatgaagagatttttatcttaaaagagaatatatcaagtatacaatgctgtttggttttg |
53070997 |
T |
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| Q |
279 |
gacatgtaaagatttgtcagttaaactaactgaaattaactttttaatttatatttattcttttaattagcacaaaaagttatcgtattcaatcctctag |
378 |
Q |
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| T |
53070996 |
gacatgtaaagatttgtcagttaaactaactgaaattaactttttaatttatatttattcttttaattagcacaaaaagttatcgtattcaatcctctag |
53070897 |
T |
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| Q |
379 |
tttggtttaatcactttggatcctctctcaaggaaaataaggggaaggaggagagtgaatat |
440 |
Q |
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| T |
53070896 |
tttggtttaatcactttggatcctctctctaggaaaacaaggggaaggaggagagtgaatat |
53070835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 53071231 - 53071100
Alignment:
| Q |
9 |
agcagagacatgttgattgatttatgtcttaatcttgcattttcacaaaccaatataaactatgttagattcaattcaagatatgttgtccaaaaactat |
108 |
Q |
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| T |
53071231 |
agcagagacatgttgattgatttatgtcttaatcttgcattttcacaaaccaatataaactat-atatgttagattcaagatatgttgtccaaaaactat |
53071133 |
T |
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| Q |
109 |
agtatatttttctgttgtaatttgttgcattta |
141 |
Q |
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| T |
53071132 |
agtatatttttctgctgtaatttgttgcattta |
53071100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 35032469 - 35032376
Alignment:
| Q |
10 |
gcagagacatgttgattgatttatgtcttaatcttgca-ttttcacaaaccaatataaactatgttagattcaattcaagatatgttgtccaaaaactat |
108 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35032469 |
gcagagacatgttgattgaattatgtcttaatcttgcatttttcacacacc--tataaactatgtta-----cattcaagatgtgttgtccaaaaactat |
35032377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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